Browse Element(s) Details


Os.15790.1.S1_at

Description gb:AK067168.1
DB_XREF= gi:32977186
TID=Os.15790.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095L15, full insert sequence.
FL= gb:AK067168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0132011/11BTB/POZ domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031463cellular_componentCul3-RING ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15790.1.S1_at--544--10291Chr08:195547..195571 (25 bp)
TTTCTGATATCAAGGACTGCTGCGA
LOC_Os08g01320
Os.15790.1.S1_at--386--2931Chr08:195536..195560 (25 bp)
AAGGACTGCTGCGAGGAGAGCCTCC
LOC_Os08g01320
Os.15790.1.S1_at--214--2991Chr08:195491..195515 (25 bp)
AATGTCCTCGAGAGGCTTCACGTCG
LOC_Os08g01320
Os.15790.1.S1_at--193--9351Chr08:195469..195493 (25 bp)
TCGCGTGGCTGTACCAGCTGCAAAA
LOC_Os08g01320
Os.15790.1.S1_at--679--2751Chr08:195440..195464 (25 bp)
AAGAAAGGGTGCCTGACCTACCTGT
LOC_Os08g01320
Os.15790.1.S1_at--492--4471Chr08:195430..195454 (25 bp)
GCCTGACCTACCTGTTTGTTTTTGG
LOC_Os08g01320
Os.15790.1.S1_at--106--3111Chr08:195377..195401 (25 bp)
AATAGCTTCTTCCAGCACGCAGATC
LOC_Os08g01320
Os.15790.1.S1_at--252--1851Chr08:195361..195385 (25 bp)
ACGCAGATCGTGAGCTGATGCTGGA
LOC_Os08g01320
Os.15790.1.S1_at--381--7251Chr08:195221..195245 (25 bp)
GTCCTTGCTAGTTGTACCCCAATGT
LOC_Os08g01320
Os.15790.1.S1_at--300--6991Chr08:195208..195232 (25 bp)
GTACCCCAATGTGGATCAGTATTCA
LOC_Os08g01320
Os.15790.1.S1_at--1016--3551Chr08:195045..195069 (25 bp)
CATCATCTGTGGTGGAATGCTTGTT
LOC_Os08g01320
Target Sequence 
TTTCTGATATCAAGGACTGCTGCGAGGAGAGCCTCCTGGAGGATATAAACTCTAGCAATGTCCTCGAGAGGCTTCACGTC
GCGTGGCTGTACCAGCTGCAAAAGCTGAAGAAAGGGTGCCTGACCTACCTGTTTGTTTTTGGGAAGATATACGATGTGAG
GGAGGAGATCAATAGCTTCTTCCAGCACGCAGATCGTGAGCTGATGCTGGAAATGTTCCAAGAGGTCATAACTGCGTGGA
AGCCCATATGAGCGCTAGCTCCAAACTGNCCCTATATATGGGGGGGTCTGTAAATATTCGGTTGCACTTGTGAAGANGTA
CACTGCGTCCTTGCTAGTTGTACCCCAATGTGGATCAGTATTCAGTTTAAGATTCNCAAGTGTTTATAGTAGAGGAAAGT
GGTTGTGTAAATAGTCGTGTGGAAACTGCAGAACTCCGGGCGGCAAATGTGATGTGGTGTGTAAATATCAGATGCTTGAA
GGCATGAATTCATGTTTATATGCATCATCTGTGGTGGAATGCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis