Browse Element(s) Details


OsAffx.27554.1.S1_at

Description tigr:9634.m01022
TID=OsAffx.27554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY150516 putative kinesin protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g104809/11kinesin-related protein, putative
LOC_Os08g013601/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10440NANA6+5368570..5371877gb protein, putative, expressed
LOC_Os06g10450OsAffx.15352.2.S1_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_s_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_x_at10/116+5373770..5375783expressed protein
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein
LOC_Os06g10480OsAffx.27554.1.S1_at9/116+5392540..5395907kinesin-related protein, putative
LOC_Os06g10490OsAffx.15353.1.S1_at11/116+5397648..5398311hypothetical protein
LOC_Os06g10500Os.5680.1.S1_at3/116+5398627..5405363kinesin like protein, putative, expressed
LOC_Os06g10510Os.53177.1.S1_s_at11/116+5408031..5408865expressed protein
LOC_Os06g10510Os.53177.1.S1_at11/116+5408031..5408865expressed protein
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0005515molecular_functionprotein binding
GO:0008233molecular_functionpeptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27554.1.S1_at--930--9331NONE
TCGCGTATGCCTACGGTACAATATT
NONE
OsAffx.27554.1.S1_at--561--6911NONE
GTATGCCTACGGTACAATATTTGCA
NONE
OsAffx.27554.1.S1_at--1143--2631Chr06:5394615..5394639 (25 bp)
AACCATTTATTTCTGAAGTTCTTCA
LOC_Os06g10480
OsAffx.27554.1.S1_at--1137--5331Chr06:5394629..5394653 (25 bp)
GAAGTTCTTCATCTACACTCATTTA
LOC_Os06g10480
OsAffx.27554.1.S1_at--556--3751Chr06:5394646..5394670 (25 bp)
CTCATTTAATGAGCAGGGTGATCAA
LOC_Os06g10480
OsAffx.27554.1.S1_at--1033--7631Chr06:5395694..5395822 (25 bp)
GGGAGGATCTTCAGTTACTGGCCGA
LOC_Os06g10480
OsAffx.27554.1.S1_at--1017--9551Chr06:5395809..5395829 (21 bp)
TCTTCAGTTACTGGCCGATGTACTA
LOC_Os06g10480
OsAffx.27554.1.S1_at--241--10451Chr06:5395812..5395836 (25 bp)
TTACTGGCCGATGTACTATGGGATC
LOC_Os06g10480
OsAffx.27554.1.S1_at--891--6271Chr06:5395821..5395845 (25 bp)
GATGTACTATGGGATCGTTTTGATC
LOC_Os06g10480
OsAffx.27554.1.S1_at--685--6391Chr06:5395833..5395857 (25 bp)
GATCGTTTTGATCCACAAAGTGTGG
LOC_Os06g10480
OsAffx.27554.1.S1_at--544--7472Chr08:223898..223927 (23 bp)
GTGTGGATACTTATGAAAACTCACT
LOC_Os08g01360
Target Sequence 
TCGCGTATGCCTACGGTACAATATTTGCATACGGGGTTACAAGCAGTGGAAAGACACATACAATGCATAAACCATTTATT
TCTGAAGTTCTTCATCTACACTCATTTAATGAGCAGGGTGATCAAATATCCCCAGGGGTAATACCTTTGGCTGTGAAGGA
CATTTTCAATATAATACAAGAGGTTGTCAATGATCTACTAAATCCTGCAGGGCAGAACTTACGGATTAGGGAGGATCTTC
AGTTACTGGCCGATGTACTATGGGATCGTTTTGATCCACAAAGTGTGGATACTTATGAAAACTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis