Browse Element(s) Details


OsAffx.15352.2.S1_at

Description tigr:9634.m01019
TID=OsAffx.15352.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1045011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10420OsAffx.27551.1.S1_at11/116+5355980..5357953hydrolase, carbon-nitrogen family protein, expressed
LOC_Os06g10430Os.22350.1.S1_at11/116+5358585..5366032expressed protein
LOC_Os06g10440NANA6+5368570..5371877gb protein, putative, expressed
LOC_Os06g10450OsAffx.15352.2.S1_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_s_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_x_at10/116+5373770..5375783expressed protein
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein
LOC_Os06g10480OsAffx.27554.1.S1_at9/116+5392540..5395907kinesin-related protein, putative
LOC_Os06g10490OsAffx.15353.1.S1_at11/116+5397648..5398311hypothetical protein
LOC_Os06g10500Os.5680.1.S1_at3/116+5398627..5405363kinesin like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15352.2.S1_at--486--8391Chr06:5374147..5374327 (25 bp)
GGCGAACAGAGAGTTCTTCAAGCCT
LOC_Os06g10450
OsAffx.15352.2.S1_at--697--7951Chr06:5375550..5375574 (25 bp)
GGATGCCCAATTCTACTGAGGACGC
LOC_Os06g10450
OsAffx.15352.2.S1_at--1000--4531Chr06:5375554..5375578 (25 bp)
GCCCAATTCTACTGAGGACGCACCG
LOC_Os06g10450
OsAffx.15352.2.S1_at--635--111Chr06:5375559..5375583 (25 bp)
ATTCTACTGAGGACGCACCGCACCA
LOC_Os06g10450
OsAffx.15352.2.S1_at--737--1731Chr06:5375583..5375607 (25 bp)
ACCTCTACTAGCCAGACCTCGTTGG
LOC_Os06g10450
OsAffx.15352.2.S1_at--257--1391Chr06:5375596..5375620 (25 bp)
AGACCTCGTTGGCTACTCTCACTCA
LOC_Os06g10450
OsAffx.15352.2.S1_at--184--6611Chr06:5375603..5375627 (25 bp)
GTTGGCTACTCTCACTCAACCCAGT
LOC_Os06g10450
OsAffx.15352.2.S1_at--859--10011Chr06:5375702..5375726 (25 bp)
TAGCATGCCTTGCCCCAAACCGGGA
LOC_Os06g10450
OsAffx.15352.2.S1_at--574--2371Chr06:5375718..5375742 (25 bp)
AAACCGGGATACCAGATCCCGCTAG
LOC_Os06g10450
OsAffx.15352.2.S1_at--261--9971Chr06:5375727..5375751 (25 bp)
TACCAGATCCCGCTAGAAGGCGCTG
LOC_Os06g10450
OsAffx.15352.2.S1_at--520--4351Chr06:5375729..5375753 (25 bp)
CCAGATCCCGCTAGAAGGCGCTGGA
LOC_Os06g10450
Target Sequence 
GGCGAACAGAGAGTTCTTCAAGCCTTTGACAATGGCTGCTGACAGATTCTTGCACTTCGCCTCGCTCGTTTCCGTGGTGG
TCTTGGCCGCCGGATCGAGATCGCCGGGCGGCGTGGCGGCGCTGCCGCGCCGTGGACAGCTGGTTGACGGCGGGGACAAC
GACAAGAACAAGTGCGTGTACATGCTGTACTACATGGGGACCGGGTGGATCTGGAAGGCCGGCACGGACGCGGCGATCGG
CGTGGAGCTCACGGCGGCGGACGGCAGCGGCTTCGCCGTCAGGGACTTGGAGCGCCGGGGATGCCCAATTCTACTGAGGA
CGCACCGCACCACCTCTACTAGCCAGACCTCGTTGGCTACTCTCACTCAACCCAGTCGCCTCGCCTCCACCTCTTACCAT
CTCTTACCGCTCGTGCCACTAGCCCCCGACCTCATCGAGCTTACCCCCACTAGCATGCCTTGCCCCAAACCGGGATACCA
GATCCCGCTAGAAGGCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15352.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis