Browse Element(s) Details


Os.5680.1.S1_at

Description gb:AK066227.1
DB_XREF= gi:32976245
TID=Os.5680.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057N17, full insert sequence.
FL= gb:AK066227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g105003/11kinesin like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10450OsAffx.15352.2.S1_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_s_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_x_at10/116+5373770..5375783expressed protein
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein
LOC_Os06g10480OsAffx.27554.1.S1_at9/116+5392540..5395907kinesin-related protein, putative
LOC_Os06g10490OsAffx.15353.1.S1_at11/116+5397648..5398311hypothetical protein
LOC_Os06g10500Os.5680.1.S1_at3/116+5398627..5405363kinesin like protein, putative, expressed
LOC_Os06g10510Os.53177.1.S1_s_at11/116+5408031..5408865expressed protein
LOC_Os06g10510Os.53177.1.S1_at11/116+5408031..5408865expressed protein
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5680.1.S1_at--656--6031Chr06:5405117..5405141 (25 bp)
GAGGGAAAGCCACACGAAACGATAT
LOC_Os06g10500
Os.5680.1.S1_at--476--5551Chr06:5405132..5405156 (25 bp)
GAAACGATATGAACCAGCTCGCAGA
LOC_Os06g10500
Os.5680.1.S1_at--455--5271Chr06:5405165..5405189 (25 bp)
GAATGCTCTGGAGGCCATGCTGAAG
LOC_Os06g10500
Os.5680.1.S1_at--914--7951Chr06:5405349..5405373 (25 bp)
GGATCATGGGCCTGAAAGCACTGAA
NONE
Os.5680.1.S1_at--861--3191Chr06:5405401..5405425 (25 bp)
CAATCGTCTGCTCTTCAGCAATGTA
NONE
Os.5680.1.S1_at--1069--10391Chr06:5405458..5405482 (25 bp)
TTTTGTACTCCATATAAGCAGCTGT
NONE
Os.5680.1.S1_at--863--7891Chr06:5405488..5405512 (25 bp)
GGTTCTTCTCCAGTCTGAAGTTTGC
NONE
Os.5680.1.S1_at--729--6851Chr06:5405507..5405531 (25 bp)
GTTTGCTGTCTGTATACTCCTGAAA
NONE
Os.5680.1.S1_at--610--9791Chr06:5405532..5405556 (25 bp)
TAAGCTTCCAGCGTGAGTAAGTGCT
NONE
Os.5680.1.S1_at--906--9771Chr06:5405549..5405573 (25 bp)
TAAGTGCTTGTTGCTGGAATATTCA
NONE
Os.5680.1.S1_at--236--5231Chr06:5405565..5405589 (25 bp)
GAATATTCACTGCTAACTGCTCCCG
NONE
Target Sequence 
GAGGGAAAGCCACACGAAACGATATGAACCAGCTCGCAGAGGAGACATGAATGCTCTGGAGGCCATGCTGAAGGAGAAGG
ACCAAAGACAGGCAGAACTTCATNCGAAAATTGAGGANTCAANACAGAAGGANGCCTTCCTGGAGAAGGAGCTTNCCAAT
ATGTGGACTGTACTGNCAAACTTGAAGAAAACCAGGGGAATTGACCAAGAAGATTTTGACTCCAAATACAATGGATCATG
GGCCTGAAAGCACTGAAGCAGGTCGTGGTAGAAAAACAATCTTCCAATCGTCTGCTCTTCAGCAATGTATAGGCAGCTGT
ACCAGATAAGCAGGGTGCTTTTTTTGTACTCCATATAAGCAGCTGTACCTNGGGTTCTTCTCCAGTCTGAAGTTTGCTGT
CTGTATACTCCTGAAATAAGCTTCCAGCGTGAGTAAGTGCTTGTTGCTGGAATATTCACTGCTAACTGCTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis