Browse Element(s) Details

Os.8793.1.S1_at

Description

gb:AK067115.1
DB_XREF= gi:32977133
TID=Os.8793.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8793 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095O17, full insert sequence.
FL= gb:AK067115.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10520	11/11	pantothenate kinase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10480	OsAffx.27554.1.S1_at	9/11	6	+	5392540..5395907	kinesin-related protein, putative
LOC_Os06g10490	OsAffx.15353.1.S1_at	11/11	6	+	5397648..5398311	hypothetical protein
LOC_Os06g10500	Os.5680.1.S1_at	3/11	6	+	5398627..5405363	kinesin like protein, putative, expressed
LOC_Os06g10510	Os.53177.1.S1_s_at	11/11	6	+	5408031..5408865	expressed protein
LOC_Os06g10510	Os.53177.1.S1_at	11/11	6	+	5408031..5408865	expressed protein
LOC_Os06g10520	Os.8793.1.S1_at	11/11	6	+	5419936..5426234	pantothenate kinase family protein, expressed
LOC_Os06g10530	Os.16164.1.S1_at	11/11	6	+	5430535..5431121	expressed protein
LOC_Os06g10540	NA	NA	6	+	5432460..5432783	hypothetical protein
LOC_Os06g10550	Os.46012.2.S1_x_at	9/11	6	+	5437693..5440871	retrotransposon protein, putative, unclassified
LOC_Os06g10550	Os.46012.3.S1_x_at	6/11	6	+	5437693..5440871	retrotransposon protein, putative, unclassified
LOC_Os06g10550	Os.27088.1.A1_x_at	5/11	6	+	5437693..5440871	retrotransposon protein, putative, unclassified
LOC_Os06g10560	Os.51034.2.S1_at	11/11	6	+	5448105..5452125	expressed protein
LOC_Os06g10560	Os.51034.1.S1_at	11/11	6	+	5448105..5452125	expressed protein
LOC_Os06g10560	Os.51034.1.S2_at	10/11	6	+	5448105..5452125	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006085	biological_process	acetyl-CoA biosynthesis
GO:0004594	molecular_function	pantothenate kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8793.1.S1_at--1090--821	1	Chr06:5425702..5425726 (25 bp)	GGCAAACCAAATACCTTTTATCATT	LOC_Os06g10520
Os.8793.1.S1_at--12--321	1	Chr06:5425794..5425818 (25 bp)	CAATGGCCTTGTTATGGAGATCGGA	LOC_Os06g10520
Os.8793.1.S1_at--835--825	1	Chr06:5425821..5425845 (25 bp)	GGCAGAGGCTGTTCAACCAGCCGAC	LOC_Os06g10520
Os.8793.1.S1_at--396--585	1	Chr06:5425843..5425867 (25 bp)	GACCACCTGGTTCAAGTCTTATGAA	LOC_Os06g10520
Os.8793.1.S1_at--859--853	1	Chr06:5425864..5425888 (25 bp)	TGAACGACTCGGGTAGGGCCCAAAT	LOC_Os06g10520
Os.8793.1.S1_at--290--555	1	Chr06:5425921..5425945 (25 bp)	GAAACGGATGCAACAAACAGCCTAA	LOC_Os06g10520
Os.8793.1.S1_at--838--213	1	Chr06:5425978..5426002 (25 bp)	ACAGTTTGGCAGTAGTTTTGATTCA	LOC_Os06g10520
Os.8793.1.S1_at--535--287	1	Chr06:5426022..5426046 (25 bp)	AAGTGTGCACACAGGTAGTTACCCA	LOC_Os06g10520
Os.8793.1.S1_at--1051--691	1	Chr06:5426036..5426060 (25 bp)	GTAGTTACCCAGTTAACATTGCTCA	LOC_Os06g10520
Os.8793.1.S1_at--732--1077	1	Chr06:5426110..5426134 (25 bp)	TTGTTGGTGTAACCTTTTCTCTGTT	LOC_Os06g10520
Os.8793.1.S1_at--987--1031	1	Chr06:5426125..5426149 (25 bp)	TTTCTCTGTTGTTCTGTATCTTGTA	LOC_Os06g10520

Target Sequence

GGCAAACCAAATACCTTTTATCATTAAACATAGGATGCAGTAGTGAAGCATGATTCCATGGCAACAAGAGAAGGTGTTTG
AGGGCAAAAGTTCAATGGCCTTGTTATGGAGATCGGAGAGGCAGAGGCTGTTCAACCAGCCGACCACCTGGTTCAAGTCT
TATGAACGACTCGGGTAGGGCCCAAATTTGTTAAGAGACTGAGGTGTGTGAGCAACATGGAAACGGATGCAACAAACAGC
CTAATACTGAGGTGTGTAAGGTTGTTGTAAACTGTAACAGTTTGGCAGTAGTTTTGATTCAAACATGATTTTTACAGAGG
AAGTGTGCACACAGGTAGTTACCCAGTTAACATTGCTCATACATATTGAGCTCATGTTGTATATTTATTTATTTTTCTTT
ACTTATTTTTGTTGGTGTAACCTTTTCTCTGTTGTTCTGTATCTTGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis