Browse Element(s) Details


Os.51034.1.S1_at

Description gb:AK067995.1
DB_XREF= gi:32978013
TID=Os.51034.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128B19, full insert sequence.
FL= gb:AK073911.1 gb:AK067995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1056011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed
LOC_Os06g10530Os.16164.1.S1_at11/116+5430535..5431121expressed protein
LOC_Os06g10540NANA6+5432460..5432783hypothetical protein
LOC_Os06g10550Os.46012.2.S1_x_at9/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.46012.3.S1_x_at6/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.27088.1.A1_x_at5/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10560Os.51034.2.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S2_at10/116+5448105..5452125expressed protein
LOC_Os06g10570OsAffx.15354.1.S1_at9/116+5456826..5458267expressed protein
LOC_Os06g10580OsAffx.27555.1.S1_at11/116+5460018..5469080cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51034.1.S1_at--451--3631Chr06:5449620..5449644 (25 bp)
CTTCGCAGGGTAGTGTTGGTTCATC
LOC_Os06g10560
Os.51034.1.S1_at--331--6031Chr06:5449775..5449799 (25 bp)
GAGATGGCCAGCTGTGATATGTTCC
LOC_Os06g10560
Os.51034.1.S1_at--11--7971Chr06:5449844..5449868 (25 bp)
GGATCATGCCCTCACATTGATGAGC
LOC_Os06g10560
Os.51034.1.S1_at--315--51Chr06:5449859..5449883 (25 bp)
ATTGATGAGCCCTTCGACTGTTATC
LOC_Os06g10560
Os.51034.1.S1_at--228--5731Chr06:5449874..5449898 (25 bp)
GACTGTTATCTCAATGGCCGGCCAG
LOC_Os06g10560
Os.51034.1.S1_at--272--9291Chr06:5449917..5449941 (25 bp)
TCCGGTGGCAACCTAGTAGCTGCAA
LOC_Os06g10560
Os.51034.1.S1_at--339--6971Chr06:5449932..5450050 (25 bp)
GTAGCTGCAACATCCCGAGATTGAA
LOC_Os06g10560
Os.51034.1.S1_at--986--5731Chr06:5450086..5450110 (25 bp)
GACTGGTTTTCGTTGGTGATTCACT
LOC_Os06g10560
Os.51034.1.S1_at--1116--7791Chr06:5450135..5450159 (25 bp)
GGTCTGCATCTTAAGGAACTCCGTT
LOC_Os06g10560
Os.51034.1.S1_at--803--2751Chr06:5450205..5450229 (25 bp)
AAGACTGAGGGCTCATACTCTTTCC
LOC_Os06g10560
Os.51034.1.S1_at--524--9911Chr06:5450220..5450277 (25 bp)
TACTCTTTCCTGTTCACGGACTATA
LOC_Os06g10560
Target Sequence 
CTTCGCAGGGTAGTGTTGGTTCATCTAAGGATCATCCTGCCCAAGCAATCAACTCAAAAACTAGCAACTACAGCGAAGTG
CTGGTGAAGGGGAATGGATCATCAACAAAACAGGCATCACAAAAACAGCCTGATAAAAAGGTTGACTGGATCAAGGAGAT
GGCCAGCTGTGATATGTTCCATGGGAATTGGGTTCGGGATGAGTCGTACCCTCTCTACCCTGAGGGATCATGCCCTCACA
TTGATGAGCCCTTCGACTGTTATCTCAATGGCCGGCCAGATCGAGCCTACCAGAAGCTCCGGTGGCAACCTAGTAGCTGC
AACATCCCGAGATTGAATCCAACTGATATGTTGGAGAGGCTGAGGGGGAAAAGACTGGTTTTCGTTGGTGATTCACTTAA
TAGGAACATGTGGGAATCCCTGGTCTGCATCTTAAGGAACTCCGTTAAGGATAAGAGGAAGGTTTTTGAGGCATCTGGTA
GGCATGAGTTTAAGACTGAGGGCTCATACTCTTTCCTGTTCACGGACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis