Browse Element(s) Details


OsAffx.27555.1.S1_at

Description tigr:9634.m01032
TID=OsAffx.27555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclic nucleotide-binding transporter 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1058011/11cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10550Os.46012.2.S1_x_at9/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.46012.3.S1_x_at6/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.27088.1.A1_x_at5/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10560Os.51034.2.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S2_at10/116+5448105..5452125expressed protein
LOC_Os06g10570OsAffx.15354.1.S1_at9/116+5456826..5458267expressed protein
LOC_Os06g10580OsAffx.27555.1.S1_at11/116+5460018..5469080cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27555.1.S1_at--951--9151Chr06:5462089..5462113 (25 bp)
TGCGCAATCCACTTGTGCTAGGTAC
LOC_Os06g10580
OsAffx.27555.1.S1_at--787--391Chr06:5460539..5460563 (25 bp)
ATCACCTTACTGGAAGAACCTTGCA
LOC_Os06g10580
OsAffx.27555.1.S1_at--731--5432Chr11:10569893..10570041 (24 bp)
GAACCTTGCAGCAAATCGCATCCAA
NONE
OsAffx.27555.1.S1_at--969--3211Chr06:5460435..5460459 (25 bp)
CAAGTCGGCAATTTTCGGTTGTACA
LOC_Os06g10580
OsAffx.27555.1.S1_at--1025--9411Chr06:5460421..5460445 (25 bp)
TCGGTTGTACAATCACGATCTACGG
LOC_Os06g10580
OsAffx.27555.1.S1_at--316--291Chr06:5460389..5460413 (25 bp)
ATAGTCGGACGTCATATAGCGCCAT
LOC_Os06g10580
OsAffx.27555.1.S1_at--507--4431Chr06:5460369..5460393 (25 bp)
GCCATGTGCACAATCGGCGTATGCA
LOC_Os06g10580
OsAffx.27555.1.S1_at--250--9891Chr06:5460336..5460360 (25 bp)
TACTTGGATGTGCATAGCGGACTTT
LOC_Os06g10580
OsAffx.27555.1.S1_at--447--9991Chr06:5460312..5460336 (25 bp)
TAGCCATTCCACTATTTCTTGTGTG
LOC_Os06g10580
OsAffx.27555.1.S1_at--412--10091Chr06:5460280..5460304 (25 bp)
TAGGCTGTTAGTTTTGGTCTTGTCG
LOC_Os06g10580
OsAffx.27555.1.S1_at--834--3311Chr06:5460241..5460265 (25 bp)
CACTAATTTGTGTTTCCTCCCGTAT
LOC_Os06g10580
Target Sequence 
TGCGCAATCCACTTGTGCTAGGTACAATCAGGTATGAATCACCTTACTGGAAGAACCTTGCAGCAAATCGCATCCAAGTC
GCATGGAGGTATCGGAAAAGGCGACTGAAGAGAGCTGAGATGCAAAGGTTGCAATAGAAATCAAGTCGGCAATTTTCGGT
TGTACAATCACGATCTACGGGGTATGCATAGTCGGACGTCATATAGCGCCATGTGCACAATCGGCGTATGCATAGTTTGA
TACTTGGATGTGCATAGCGGACTTTAGCCATTCCACTATTTCTTGTGTGGGGGAAGTAGGCTGTTAGTTTTGGTCTTGTC
GGTTTTGTGCAGGTTCACTAATTTGTGTTTCCTCCCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis