Browse Element(s) Details


OsAffx.15354.1.S1_at

Description tigr:9634.m01031
TID=OsAffx.15354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g105709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10540NANA6+5432460..5432783hypothetical protein
LOC_Os06g10550Os.46012.2.S1_x_at9/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.46012.3.S1_x_at6/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.27088.1.A1_x_at5/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10560Os.51034.2.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S2_at10/116+5448105..5452125expressed protein
LOC_Os06g10570OsAffx.15354.1.S1_at9/116+5456826..5458267expressed protein
LOC_Os06g10580OsAffx.27555.1.S1_at11/116+5460018..5469080cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15354.1.S1_at--1152--3351Chr06:5456970..5456994 (25 bp)
CACCATGGGAATGTGGATCTTGGCA
LOC_Os06g10570
OsAffx.15354.1.S1_at--925--8551Chr06:5456983..5457007 (25 bp)
TGGATCTTGGCAAGAAATCGTCCGG
LOC_Os06g10570
OsAffx.15354.1.S1_at--653--8351Chr06:5457016..5457040 (25 bp)
GGCGGCGCCTGGCATTGTTGCAGCA
LOC_Os06g10570
OsAffx.15354.1.S1_at--831--2291Chr06:5457164..5457188 (25 bp)
AAATGGAGTGGATTGCAGCGACAGC
LOC_Os06g10570
OsAffx.15354.1.S1_at--844--6571Chr06:5457174..5457198 (25 bp)
GATTGCAGCGACAGCAAGGGACCTG
LOC_Os06g10570
OsAffx.15354.1.S1_at--77--3391Chr06:5457179..5457203 (25 bp)
CAGCGACAGCAAGGGACCTGGTGAA
LOC_Os06g10570
OsAffx.15354.1.S1_at--965--3391Chr06:5457185..5457209 (25 bp)
CAGCAAGGGACCTGGTGAAGAACAT
LOC_Os06g10570
OsAffx.15354.1.S1_at--809--6031NONE
GAGATGCTCACAGGAGCGTGCCATT
NONE
OsAffx.15354.1.S1_at--1035--2111Chr06:5457833..5457852 (20 bp)
ACAGGAGCGTGCCATTGCCATGCAC
LOC_Os06g10570
OsAffx.15354.1.S1_at--197--7291Chr06:5457836..5457860 (25 bp)
GTGCCATTGCCATGCACCGGCGGCG
LOC_Os06g10570
OsAffx.15354.1.S1_at--180--4631NONE
GCGAGGGTGGCGGTGCATCCAGCCG
NONE
Target Sequence 
CACCATGGGAATGTGGATCTTGGCAAGAAATCGTCCGGGGTGGCAAGGCGGCGCCTGGCATTGTTGCAGCAGGAAAATGG
AGTGGATTGCAGCGACAGCAAGGGACCTGGTGAAGAACATGGAGGAGCTGGAGATGCTCACAGGAGCGTGCCATTGCCAT
GCACCGGCGGCGAGGTGGGCAGCAAGTCGGAGCCGGCGGCGGCGGTTGCACCGGCGGTGATCGTGGATGTGAAGGAGGAG
GAGAAGAGCGTCGGCAATGGCGGCGGCGGCGGTGGAGCCAAGAAGCGGCGAGGTGGTGGCGCGCCGGCGGTGCTGATGGA
GGGGTCACGGTGCAGCCGCGTGAACGGGCGAGGGTGGCGGTGCATCCAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis