Browse Element(s) Details


Os.16164.1.S1_at

Description gb:AK062309.1
DB_XREF= gi:32972327
TID=Os.16164.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B04, full insert sequence.
FL= gb:AK062309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1053011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10510Os.53177.1.S1_s_at11/116+5408031..5408865expressed protein
LOC_Os06g10510Os.53177.1.S1_at11/116+5408031..5408865expressed protein
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed
LOC_Os06g10530Os.16164.1.S1_at11/116+5430535..5431121expressed protein
LOC_Os06g10540NANA6+5432460..5432783hypothetical protein
LOC_Os06g10550Os.46012.2.S1_x_at9/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.46012.3.S1_x_at6/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10550Os.27088.1.A1_x_at5/116+5437693..5440871retrotransposon protein, putative, unclassified
LOC_Os06g10560Os.51034.2.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S1_at11/116+5448105..5452125expressed protein
LOC_Os06g10560Os.51034.1.S2_at10/116+5448105..5452125expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16164.1.S1_at--1049--451Chr06:5430579..5430603 (25 bp)
ATCTCATTCTCTCTTGGATTGCAAG
LOC_Os06g10530
Os.16164.1.S1_at--59--7931Chr06:5430594..5430618 (25 bp)
GGATTGCAAGCTACAGTGTCTGCTC
LOC_Os06g10530
Os.16164.1.S1_at--148--2711Chr06:5430601..5430625 (25 bp)
AAGCTACAGTGTCTGCTCGGTGCAG
LOC_Os06g10530
Os.16164.1.S1_at--147--3791Chr06:5430616..5430640 (25 bp)
CTCGGTGCAGTCACAGAGCTAGTAG
LOC_Os06g10530
Os.16164.1.S1_at--976--10031Chr06:5430635..5430659 (25 bp)
TAGTAGCAATGGTCGACATGGCGGA
LOC_Os06g10530
Os.16164.1.S1_at--799--1551Chr06:5430811..5430835 (25 bp)
AGCTTCCGGCCGATGCGGAGCATGA
LOC_Os06g10530
Os.16164.1.S1_at--780--1371Chr06:5430939..5430963 (25 bp)
AGACCTTGCCGAGTAGTTCATTGTT
LOC_Os06g10530
Os.16164.1.S1_at--61--6751Chr06:5430954..5430978 (25 bp)
GTTCATTGTTCAGTGGTTTCAGCTA
LOC_Os06g10530
Os.16164.1.S1_at--5--1211Chr06:5430991..5431015 (25 bp)
AGTATACTCGTAATGCATTTGTTCA
LOC_Os06g10530
Os.16164.1.S1_at--586--2831Chr06:5431061..5431085 (25 bp)
AAGTTAGTATGTGCTGTTTGTGAAT
LOC_Os06g10530
Os.16164.1.S1_at--302--6511Chr06:5431092..5431116 (25 bp)
GATATAGTTTGGCTTTGTACACATT
LOC_Os06g10530
Target Sequence 
ATCTCATTCTCTCTTGGATTGCAAGCTACAGTGTCTGCTCGGTGCAGTCACAGAGCTAGTAGCAATGGTCGACATGGCGG
AGGCGGCGGCGTCCATGTCGCCGGAGCTCGCCGCGGCGCTGGCGAAGGTGGCCNTGTTCNCGGTCGTGCAGGCGCTGGTG
TACCTCATCCNTGCGCAAGTCGTCGGGCGTCTTCTCCCCGGACAGGACGGCGGCGGCGGGGTCGAGGTCCCTCAGCTTCC
GGCCGATGCGGAGCATGAGCGTCCGCCGCTTCCTGGCGGCGCTCTCCGACGTCCCCGTCGGCGTCACGGAGGACGGTGGC
TCNGCCGGCGCCGGCGCCGGCNGCCGCCGCATCGCGGGCCTGCAGACCTTGCCGAGTAGTTCATTGTTCAGTGGTTTCAG
CTAATTAATGACAGTAGTATACTCGTAATGCATTTGTTCATGGCTATTGTGAAGAAGGAATCATTTAACATTAGATATAC
TTAGTAAGTTAGTATGTGCTGTTTGTGAATTATTATGATATAGTTTGGCTTTGTACACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis