Browse Element(s) Details


Os.53177.1.S1_at

Description gb:AK071212.1
DB_XREF= gi:32981235
TID=Os.53177.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086C11, full insert sequence.
FL= gb:AK071212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1051011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein
LOC_Os06g10480OsAffx.27554.1.S1_at9/116+5392540..5395907kinesin-related protein, putative
LOC_Os06g10490OsAffx.15353.1.S1_at11/116+5397648..5398311hypothetical protein
LOC_Os06g10500Os.5680.1.S1_at3/116+5398627..5405363kinesin like protein, putative, expressed
LOC_Os06g10510Os.53177.1.S1_s_at11/116+5408031..5408865expressed protein
LOC_Os06g10510Os.53177.1.S1_at11/116+5408031..5408865expressed protein
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed
LOC_Os06g10530Os.16164.1.S1_at11/116+5430535..5431121expressed protein
LOC_Os06g10540NANA6+5432460..5432783hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53177.1.S1_at--572--4251Chr06:5408301..5408325 (25 bp)
CCGTGACCACGCTGTACGCGCGGTG
LOC_Os06g10510
Os.53177.1.S1_at--398--8931Chr06:5408304..5408328 (25 bp)
TGACCACGCTGTACGCGCGGTGCGA
LOC_Os06g10510
Os.53177.1.S1_at--1061--3531Chr06:5408392..5408416 (25 bp)
CATCGTCGCCGTGCAGGTATGGGCC
LOC_Os06g10510
Os.53177.1.S1_at--1139--7231Chr06:5408396..5408420 (25 bp)
GTCGCCGTGCAGGTATGGGCCGCGA
LOC_Os06g10510
Os.53177.1.S1_at--580--4251Chr06:5408400..5408424 (25 bp)
CCGTGCAGGTATGGGCCGCGAGCGC
LOC_Os06g10510
Os.53177.1.S1_at--433--5131Chr06:5408665..5408689 (25 bp)
GCAAAAGCTCGTGCATGTAAAACCA
LOC_Os06g10510
Os.53177.1.S1_at--745--3271Chr06:5408666..5408690 (25 bp)
CAAAAGCTCGTGCATGTAAAACCAT
LOC_Os06g10510
Os.53177.1.S1_at--713--2351Chr06:5408668..5408692 (25 bp)
AAAGCTCGTGCATGTAAAACCATGG
LOC_Os06g10510
Os.53177.1.S1_at--255--2691Chr06:5408669..5408693 (25 bp)
AAGCTCGTGCATGTAAAACCATGGT
LOC_Os06g10510
Os.53177.1.S1_at--546--1571Chr06:5408670..5408694 (25 bp)
AGCTCGTGCATGTAAAACCATGGTG
LOC_Os06g10510
Os.53177.1.S1_at--218--4811Chr06:5408671..5408695 (25 bp)
GCTCGTGCATGTAAAACCATGGTGA
LOC_Os06g10510
Target Sequence 
CCGTGACCACGCTGTACGCGCGGTGCGAGGAGGCGGTGGAGAGCCTGCTCGACCAGCTCCGCGTCCTCCTCATCCTCTCC
CCGCTGCTGCTCATCGTCGCCGTGCAGGTATGGGCCGCGAGCGCCGCCGCCGCCGCCGCCGACCGCCGTGGCGCCGGCGG
AGGCCTCATGTACCTCCTCGCGCAGCTGATGGGCATGGGCGACGGCGGCGGCTCGCCGTACGGCCGTTGGCACGGCGGCG
GCGGCGGCGCGTCGTCGTCGCCGTGGGGCGTGGCGCTGGTGCTGGTGCTGGTGCTGTTCTTGGTGTCGTACCAGTCGTCG
TTCCAGAGCTGGTGGTTCCCGCTGCTCAGCCGCCGATGAGAATTGCAAAAGCTCGTGCATGTAAAACCATGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis