Browse Element(s) Details


OsAffx.15353.1.S1_at

Description tigr:9634.m01023
TID=OsAffx.15353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1049011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10450OsAffx.15352.2.S1_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_s_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_x_at10/116+5373770..5375783expressed protein
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein
LOC_Os06g10480OsAffx.27554.1.S1_at9/116+5392540..5395907kinesin-related protein, putative
LOC_Os06g10490OsAffx.15353.1.S1_at11/116+5397648..5398311hypothetical protein
LOC_Os06g10500Os.5680.1.S1_at3/116+5398627..5405363kinesin like protein, putative, expressed
LOC_Os06g10510Os.53177.1.S1_s_at11/116+5408031..5408865expressed protein
LOC_Os06g10510Os.53177.1.S1_at11/116+5408031..5408865expressed protein
LOC_Os06g10520Os.8793.1.S1_at11/116+5419936..5426234pantothenate kinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15353.1.S1_at--547--4691Chr06:5398164..5398188 (25 bp)
GCGGCAAGCTGCAGACTGAGCTTCA
LOC_Os06g10490
OsAffx.15353.1.S1_at--811--3531Chr06:5398060..5398084 (25 bp)
CATGCCGATGATGCCGAGGGATCTT
LOC_Os06g10490
OsAffx.15353.1.S1_at--651--4511Chr06:5398048..5398072 (25 bp)
GCCGAGGGATCTTTGTGGTGTCCAA
LOC_Os06g10490
OsAffx.15353.1.S1_at--727--1851Chr06:5398005..5398029 (25 bp)
ACGAGCAGCCAAGGTGCACCGGAAA
LOC_Os06g10490
OsAffx.15353.1.S1_at--592--2291Chr06:5397983..5398007 (25 bp)
AAAGGCGCAAGGGTATTTCAGTCAC
LOC_Os06g10490
OsAffx.15353.1.S1_at--159--6891Chr06:5397971..5397995 (25 bp)
GTATTTCAGTCACTCCGCATCAAAA
LOC_Os06g10490
OsAffx.15353.1.S1_at--242--3051Chr06:5397947..5397971 (25 bp)
AATCGGGACCCTTAGCACTTTATCA
LOC_Os06g10490
OsAffx.15353.1.S1_at--692--3091Chr06:5397917..5397941 (25 bp)
AATACATTATTTTAGTCGGCGCAGT
LOC_Os06g10490
OsAffx.15353.1.S1_at--874--9451Chr06:5397902..5397926 (25 bp)
TCGGCGCAGTGTCTGTTGGCAAATT
LOC_Os06g10490
OsAffx.15353.1.S1_at--32--8551Chr06:5397871..5397891 (21 bp)
TGGAGTGTCTTTTCCCAAACGGTGA
LOC_Os06g10490
OsAffx.15353.1.S1_at--307--8091Chr06:5397680..5397704 (25 bp)
GGACCAAGCCTTGGCACCAGAAGGG
LOC_Os06g10490
Target Sequence 
GCGGCAAGCTGCAGACTGAGCTTCAAGATGAGGGGGGAGCAGCAGCAGAGCCTCCAGGTGGAGACCAAGATCTTCGTCAC
CTCGCTGCGCGCCGCGCCGGCGCCCATGCCGATGATGCCGAGGGATCTTTGTGGTGTCCAAGTGGGCGAGGGTAAGAACA
CGAGCAGCCAAGGTGCACCGGAAAGGCGCAAGGGTATTTCAGTCACTCCGCATCAAAAATCGGGACCCTTAGCACTTTAT
CAGCACAAATACATTATTTTAGTCGGCGCAGTGTCTGTTGGCAAATTACCACGATTATGGAGTGTCTTTTCCCAAACGGT
GAATGCAGTATCAGCAGCCCCCAACGCAGTTGGTCCAGGACCAAGCCTTGGCACCAGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis