Browse Element(s) Details


Os.22350.1.S1_at

Description gb:AK121282.1
DB_XREF= gi:37990905
TID=Os.22350.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108L12, full insert sequence.
FL= gb:AK121282.1 gb:AK099498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1043011/11expressed protein
LOC_Os05g171501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10380Os.14491.2.S1_x_at5/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10380Os.47463.1.S1_x_at3/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10390NANA6+5336000..5339629retrotransposon protein, putative, unclassified
LOC_Os06g10400NANA6+5341446..5341820hypothetical protein
LOC_Os06g10410OsAffx.27550.1.S1_at11/116+5344378..5347680Mechanosensitive ion channel family protein, expressed
LOC_Os06g10420OsAffx.27551.1.S1_at11/116+5355980..5357953hydrolase, carbon-nitrogen family protein, expressed
LOC_Os06g10430Os.22350.1.S1_at11/116+5358585..5366032expressed protein
LOC_Os06g10440NANA6+5368570..5371877gb protein, putative, expressed
LOC_Os06g10450OsAffx.15352.2.S1_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_s_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_x_at10/116+5373770..5375783expressed protein
LOC_Os06g10460NANA6+5385401..5386221hypothetical protein
LOC_Os06g10470NANA6+5387230..5388015Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22350.1.S1_at--251--6571Chr06:5365471..5365495 (25 bp)
GATTCAGACACCTAGAGAGATGCCG
LOC_Os06g10430
Os.22350.1.S1_at--641--1351Chr06:5365486..5365510 (25 bp)
AGAGATGCCGACTTTGCAGTGTCCC
LOC_Os06g10430
Os.22350.1.S1_at--811--2091Chr06:5365538..5365562 (25 bp)
ACATCTGGTGCTTTTGTGCCGAATC
LOC_Os06g10430
Os.22350.1.S1_at--477--7291Chr06:5365553..5365577 (25 bp)
GTGCCGAATCCTGGGAATGCATCAT
LOC_Os06g10430
Os.22350.1.S1_at--547--3151Chr06:5365608..5365632 (25 bp)
AATTCCCAGGCTTGTACCATGCACA
LOC_Os06g10430
Os.22350.1.S1_at--1146--8731Chr06:5365648..5365672 (25 bp)
TGTAAGTCCACATCCCATGGTGCAT
LOC_Os06g10430
Os.22350.1.S1_at--322--4971Chr06:5365669..5365693 (25 bp)
GCATCAACAAGTCCAATCGGCAATT
LOC_Os06g10430
Os.22350.1.S1_at--420--3252Chr06:5365751..5365775 (25 bp)
CAACCCCAGCTTGGTCATTGGAGAC
LOC_Os06g10430
Os.22350.1.S1_at--94--3591Chr06:5365864..5365888 (25 bp)
CATTTGTTTTTAGTGCAGCTCTTTC
LOC_Os06g10430
Os.22350.1.S1_at--211--5071Chr06:5365878..5365902 (25 bp)
GCAGCTCTTTCTGATCTATTTAAGG
LOC_Os06g10430
Os.22350.1.S1_at--716--1191Chr06:5365942..5365966 (25 bp)
AGTATCCCATCTGAACTGGTTTGAT
LOC_Os06g10430
Target Sequence 
GATTCAGACACCTAGAGAGATGCCGACTTTGCAGTGTCCCCCATATTTCAATTTATCAGGTCAAGCAACATCTGGTGCTT
TTGTGCCGAATCCTGGGAATGCATCATTCAATGCTACAGCTCAATCCTCCCATGCGCAATTCCCAGGCTTGTACCATGCA
CAGCAGCCTTNGTCAATTGTAAGTCCACATCCCATGGTGCATCAACAAGTCCAATCGGCAATTGGTCCCAACGGTGGAGT
TGGTGTGGCTACACCAGCCCCTCAGGTAGGGGCTTATCANCAACCCCAGCTTGGTCATTGGAGACCTGGCTTTTAAAGGT
TTATTAATTATCTGTAATTAGGGGGTCACAAGAGCCTTTATGTAACAAAAGAGGCTACTTTTAACAGGAAGCACATTTGT
TTTTAGTGCAGCTCTTTCTGATCTATTTAAGGTATAACAGGGTTTTGTTAGCTTTCCCCCAAGGTGAATTCAGTATCCCA
TCTGAACTGGTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis