Browse Element(s) Details


OsAffx.27550.1.S1_at

Description tigr:9634.m01014
TID=OsAffx.27550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein T30F21.6, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1041011/11Mechanosensitive ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10360NANA6+5322131..5325222transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10370NANA6+5326809..5329732transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g10380Os.14491.2.S1_x_at5/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10380Os.47463.1.S1_x_at3/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10390NANA6+5336000..5339629retrotransposon protein, putative, unclassified
LOC_Os06g10400NANA6+5341446..5341820hypothetical protein
LOC_Os06g10410OsAffx.27550.1.S1_at11/116+5344378..5347680Mechanosensitive ion channel family protein, expressed
LOC_Os06g10420OsAffx.27551.1.S1_at11/116+5355980..5357953hydrolase, carbon-nitrogen family protein, expressed
LOC_Os06g10430Os.22350.1.S1_at11/116+5358585..5366032expressed protein
LOC_Os06g10440NANA6+5368570..5371877gb protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27550.1.S1_at--452--291Chr06:5344832..5344856 (25 bp)
ATAGACAGCAAACCGACGCACTGGT
LOC_Os06g10410
OsAffx.27550.1.S1_at--592--8971Chr06:5344808..5344832 (25 bp)
TGCCCTATTCACACCGTAAACTTAA
LOC_Os06g10410
OsAffx.27550.1.S1_at--900--1271Chr06:5344762..5344786 (25 bp)
AGATCAACATGTCGCTGTGTGTCCA
LOC_Os06g10410
OsAffx.27550.1.S1_at--407--7471Chr06:5344746..5344770 (25 bp)
GTGTGTCCAGCATACGATGAACTTC
LOC_Os06g10410
OsAffx.27550.1.S1_at--7--6051Chr06:5344695..5344719 (25 bp)
GAGATCTGAGCTCGTCATGGAACTA
LOC_Os06g10410
OsAffx.27550.1.S1_at--455--8891Chr06:5344659..5344683 (25 bp)
TGAGGAGATGTCCATCACCTACCAC
LOC_Os06g10410
OsAffx.27550.1.S1_at--186--10771Chr06:5344618..5344642 (25 bp)
TTGAGCTTAGCTTTGTCGGCCCAAA
LOC_Os06g10410
OsAffx.27550.1.S1_at--411--2691Chr06:5344550..5344574 (25 bp)
AAGCTAACAACTGATGACCGTACCA
LOC_Os06g10410
OsAffx.27550.1.S1_at--437--6211Chr06:5344514..5344538 (25 bp)
GAGGCTGACAGCTAATGACTTTACA
LOC_Os06g10410
OsAffx.27550.1.S1_at--990--171Chr06:5344465..5344489 (25 bp)
ATTTTTGTACATGCCTAAGCCTCCT
LOC_Os06g10410
OsAffx.27550.1.S1_at--167--4291Chr06:5344446..5344470 (25 bp)
CCTCCTGTGGGAATACTTTAGCGTA
LOC_Os06g10410
Target Sequence 
ATAGACAGCAAACCGACGCACTGGTGCCCTATTCACACCGTAAACTTAAAGGACATCTTGGACGTGAACAAGATCAACAT
GTCGCTGTGTGTCCAGCATACGATGAACTTCCAGAATATCCGAGAGAGGAACCTCAGGAGATCTGAGCTCGTCATGGAAC
TAAAGAAACTGTTTGAGGAGATGTCCATCACCTACCACCTTTTGCCCCAAAAGGTTGAGCTTAGCTTTGTCGGCCCAAAT
CCAATACCCATTGCTCTTCCACAAAGCAGATAAACAATGGGAAAGCTAACAACTGATGACCGTACCATGGTGGTCAAGGA
GGCTGACAGCTAATGACTTTACAGTTTGTACTGATGTTCTTCAAAATATTTTTGTACATGCCTAAGCCTCCTGTGGGAAT
ACTTTAGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis