Browse Element(s) Details


Os.20625.1.S1_at

Description gb:AK101543.1
DB_XREF= gi:32986752
TID=Os.20625.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048I07, full insert sequence.
FL= gb:AK101543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0136011/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008233molecular_functionpeptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20625.1.S1_at--41--8071Chr08:225417..225441 (25 bp)
GGAGAAGTCTATCAGCTGCGGTTTA
LOC_Os08g01360
Os.20625.1.S1_at--953--9431Chr08:225511..225535 (25 bp)
TCGGATCAGTCGCTACCAAGATGCT
LOC_Os08g01360
Os.20625.1.S1_at--712--7951Chr08:225513..225537 (25 bp)
GGATCAGTCGCTACCAAGATGCTGA
LOC_Os08g01360
Os.20625.1.S1_at--98--7231Chr08:225519..225543 (25 bp)
GTCGCTACCAAGATGCTGATTGATC
LOC_Os08g01360
Os.20625.1.S1_at--1074--4851Chr08:225522..225546 (25 bp)
GCTACCAAGATGCTGATTGATCTTA
LOC_Os08g01360
Os.20625.1.S1_at--410--10311Chr08:225559..225583 (25 bp)
TTTCATGAGCATTTGTGCAAGCCCC
LOC_Os08g01360
Os.20625.1.S1_at--303--9631Chr08:225561..225585 (25 bp)
TCATGAGCATTTGTGCAAGCCCCTG
LOC_Os08g01360
Os.20625.1.S1_at--474--8911Chr08:225564..225588 (25 bp)
TGAGCATTTGTGCAAGCCCCTGCTA
LOC_Os08g01360
Os.20625.1.S1_at--436--9271Chr08:225596..225620 (25 bp)
TCCTGGGAGATGCAAATAAAACAGA
LOC_Os08g01360
Os.20625.1.S1_at--1123--2391Chr08:225614..225638 (25 bp)
AAACAGAAAAATCCTATGCGACACA
LOC_Os08g01360
Os.20625.1.S1_at--44--2271Chr08:225622..225646 (25 bp)
AAATCCTATGCGACACAAAACTGGC
LOC_Os08g01360
Target Sequence 
GGAGAAGTCTATCAGCTGCGGTTTAACTCGATCATTACGTCAGGCCTATGTACAGCATTGTCTTGATTCTGATGGAAGCT
TGTCTGCTGTGACATCGGATCAGTCGCTACCAAGATGCTGATTGATCTTACGAAGTTCACTGTTTCATGAGCATTTGTGC
AAGCCCCTGCTAGATTTGTTCCTGGGAGATGCAAATAAAACAGAAAAATCCTATGCGACACAAAACTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis