Browse Element(s) Details


Os.18020.1.S1_at

Description gb:AK069415.1
DB_XREF= gi:32979439
TID=Os.18020.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019E02, full insert sequence.
FL= gb:AK069415.1 gb:AK099227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0143011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18020.1.S1_at--566--9911Chr08:273283..273307 (25 bp)
TACTCCAATGTCTTTGCTGTGGCAC
LOC_Os08g01430
Os.18020.1.S1_at--242--7011Chr08:272069..272093 (25 bp)
GTACTGAAGATCTGAATCCCACATT
LOC_Os08g01430
Os.18020.1.S1_at--1050--471Chr08:272004..272028 (25 bp)
ATCTGAGTTGATGTACCGCTGCTGC
LOC_Os08g01430
Os.18020.1.S1_at--365--5391Chr08:271968..271992 (25 bp)
GAAGCAGCATGGCAGCAGTGTTAAT
LOC_Os08g01430
Os.18020.1.S1_at--579--3011Chr08:271917..271941 (25 bp)
AATGCAGCCAACTCCATCTGTATTT
LOC_Os08g01430
Os.18020.1.S1_at--681--6871Chr08:271898..271922 (25 bp)
GTATTTCCCTTGTTACTGAACTGGC
LOC_Os08g01430
Os.18020.1.S1_at--635--2571Chr08:271880..271904 (25 bp)
AACTGGCATCTTCATGCCTGCAGTA
LOC_Os08g01430
Os.18020.1.S1_at--1037--6351Chr08:271815..271839 (25 bp)
GATCCAGCCTCCTGATGATAACATC
LOC_Os08g01430
Os.18020.1.S1_at--829--6471Chr08:271721..271745 (25 bp)
GATACAGCTAGGTGACCAGCGCAAA
LOC_Os08g01430
Os.18020.1.S1_at--1107--4571Chr08:271703..271727 (25 bp)
GCGCAAATTGTAAGCTGGCACAGTA
LOC_Os08g01430
Os.18020.1.S1_at--886--10231Chr08:271673..271697 (25 bp)
TTTGGCATGATGTCGCTGGGTGAAT
LOC_Os08g01430
Target Sequence 
TACTCCAATGTCTTTGCTGTGGCACCTGGCAGCACGAGCTTCCCAGCNTTCTCCAAGGTAAAAGATGGCTTGGNAACCGT
TATGATGGTATCACCTGATACAGAGGCNANAGCGACNGATCTTNGCGGGNNCATGTTCTACTGTGNTTCCTTGCCATACG
TNNTGTACTGAAGATCTGAATCCCACATTTNTCACCCTGAACCTGAAGGTTGGCNATCACCGTACGTTGATCTGAGTTGA
TGTACCGCTGCTGCTGCTGTTAATGGAAGCAGCATGGCAGCAGTGTTAATATGGTATATATTGGTACCCTGAAGGAAATG
CAGCCAACTCCATCTGTATTTCCCTTGTTACTGAACTGGCATCTTCATGCCTGCAGTAAACTAAAATGTCAAAATTTAGC
AAATGAGCNACAGTCGCAGATCCAGCCTCCTGATGATAACATCATGAGGTGTTAAACTGACATGAGTTGAAAGTTACATT
AATGTCAAATTGTAAAATTTTGGAGGCATACNGATACAGCTAGGTGACCAGCGCAAATTGTAAGCTGGCACAGTAATTAT
TTTGGCATGATGTCGCTGGGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis