Browse Element(s) Details


OsAffx.28975.1.S1_at

Description tigr:9636.m00046
TID=OsAffx.28975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF123601 cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0147011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01500NANA8+300821..301111hypothetical protein
LOC_Os08g01510NANA8+301981..303580Cytochrome P450 71C4, putative, expressed
LOC_Os08g01520NANA8+312618..314665Cytochrome P450 71C4, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28975.1.S1_at--411--9911Chr08:287560..287995 (25 bp)
TACTCCAACAACATGAAGCCCCAGA
LOC_Os08g01470
OsAffx.28975.1.S1_at--1001--2491Chr08:287551..287659 (25 bp)
AACATGAAGCCCCAGATGATAGCCA
LOC_Os08g01470
OsAffx.28975.1.S1_at--404--8991Chr08:287547..287570 (24 bp)
TGAAGCCCCAGATGATAGCCAAGCT
LOC_Os08g01470
OsAffx.28975.1.S1_at--238--10711Chr08:287394..287418 (25 bp)
TTGCGCCCCATGTCTCCGTGGTTGA
LOC_Os08g01470
OsAffx.28975.1.S1_at--860--4152Chr10:3121923..3122026 (25 bp)
CGCCCCATGTCTCCGTGGTTGACTG
NONE
OsAffx.28975.1.S1_at--50--9591Chr08:287208..287232 (25 bp)
TCTTGCCATTCAGGACTGGTCGAAG
LOC_Os08g01470
OsAffx.28975.1.S1_at--8--1031Chr08:287174..287198 (25 bp)
AGGTATAAACTTCGCGATCACCACC
LOC_Os08g01470
OsAffx.28975.1.S1_at--517--6911Chr08:287123..287147 (25 bp)
GTATCGCTTCGATTGGAAGCTATTC
LOC_Os08g01470
OsAffx.28975.1.S1_at--278--3631Chr08:287117..287141 (25 bp)
CTTCGATTGGAAGCTATTCACCTCA
LOC_Os08g01470
OsAffx.28975.1.S1_at--969--4031Chr08:287114..287138 (25 bp)
CGATTGGAAGCTATTCACCTCAAGG
LOC_Os08g01470
OsAffx.28975.1.S1_at--123--10511Chr08:287101..287125 (25 bp)
TTCACCTCAAGGATCGATATGACAG
LOC_Os08g01470
Target Sequence 
TACTCCAACAACATGAAGCCCCAGATGATAGCCAAGCTACAGGCTGAGGTGAGGGGTGTGGTATCAAAAGGGCAGGACAT
CGTTACCGAGGAGCATCTAGGTAGGATGCCCTACCTAAAGGCGGTGATCAAGGAGACACTCCGACTACACCCTGCAGCGC
CACTTCTTGCGCCCCATGTCTCCGTGGTTGACTGTAATGTCGAGGGCTATACTATACCCTCAGGCACTCGTGTCATCGTC
AATGCATGGGCTATTGCCAGGGACCCTAGCTATTGGGAAAATGCCGAGGAGTTCATGCCAGAGAGGTTCCTTAGCAACAC
AATGGCTGACTACAATGGAAATAATTTCAATTTCTTGCCATTCAGGACTGGTCGAAGGATATGCCCAGGTATAAACTTCG
CGATCACCACCATCGAGATCATGCTAGCAAGCCTTGTGTATCGCTTCGATTGGAAGCTATTCACCTCAAGGATCGATATG
ACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis