Browse Element(s) Details


Os.9638.1.S1_at

Description gb:AK063987.1
DB_XREF= gi:32974005
TID=Os.9638.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D11, full insert sequence.
FL= gb:AK101575.1 gb:AK063987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0141011/11glucose-6-phosphate/phosphate translocator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9638.1.S1_at--940--7431Chr08:262920..262944 (25 bp)
GTGTCGTGGATGATCTTCCGGAACC
LOC_Os08g01410
Os.9638.1.S1_at--752--4051Chr08:262886..262910 (25 bp)
CGATGAACGCTGTCGGGTGCGCAAT
LOC_Os08g01410
Os.9638.1.S1_at--674--8331Chr08:262851..262875 (25 bp)
GGCTGCACCTTCTATGGCTATGTGA
LOC_Os08g01410
Os.9638.1.S1_at--1081--771Chr08:262832..262856 (25 bp)
ATGTGAGGCATCTCATCTCGCAGCA
LOC_Os08g01410
Os.9638.1.S1_at--1017--5051Chr08:262813..262837 (25 bp)
GCAGCAGAGCGTTAATTCGAGCCCA
LOC_Os08g01410
Os.9638.1.S1_at--840--1291Chr08:262766..262790 (25 bp)
AGATGCTTCCCCTCGTAGGAGACAA
LOC_Os08g01410
Os.9638.1.S1_at--959--8071Chr08:262652..262676 (25 bp)
GGAGCATCATCTAACAGCTTTCAGG
LOC_Os08g01410
Os.9638.1.S1_at--3--3051Chr08:262624..262648 (25 bp)
AATCCTGAGGCACTTTTGTCATAGA
LOC_Os08g01410
Os.9638.1.S1_at--886--3651Chr08:262547..262571 (25 bp)
CTTCTTGTCATCTGAACATGCTGGG
LOC_Os08g01410
Os.9638.1.S1_at--307--6851Chr08:262443..262467 (25 bp)
GTTTGCTCGTAACTATGCTACTATT
LOC_Os08g01410
Os.9638.1.S1_at--506--6451Chr08:262407..262431 (25 bp)
GATCACACAGCATTGTTCAGTTGAC
LOC_Os08g01410
Target Sequence 
GTGTCGTGGATGATCTTCCGGAACCCGATCTCCGCGATGAACGCTGTCGGGTGCGCAATCACGCTCGTCGGCTGCACCTT
CTATGGCTATGTGAGGCATCTCATCTCGCAGCAGAGCGTTAATTCGAGCCCACGCACGCCGAGGAGCCGGATGGAGATGC
TTCCCCTCGTAGGAGACAAGCAAGAGAAGATTTAATTGGCCACCAAATTAAAACAAGTTGATACTCAAAAGAGGAGGGAA
TTGTTGGTGCATGATCAATAGGAATAAAGGAGCATCATCTAACAGCTTTCAGGATTAATCCTGAGGCACTTTTGTCATAG
AAAATTATTCAGAGTTTTCAGTTGAGTTGTTCGTATAGAGCTAATAGAACTTCCTTCTTGTCATCTGAACATGCTGGGGT
GCTCCTCAGCTGTATCTCTCTCTCTCTCTCTCTTTCTATTCTTTTCTTCCTTTTTCTCACAGGATTAAAAGATTTTTGTT
TGCTCGTAACTATGCTACTATTGCTACACATTTGATCACACAGCATTGTTCAGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis