Browse Element(s) Details


Os.49551.1.S1_at

Description gb:AK101404.1
DB_XREF= gi:32986613
TID=Os.49551.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037G15, full insert sequence.
FL= gb:AK101404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0140011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49551.1.S1_at--967--4971Chr08:254198..254222 (25 bp)
GCATCCTGATGTACGAGTTCCGCCA
LOC_Os08g01400
Os.49551.1.S1_at--377--1311Chr08:254084..254108 (25 bp)
AGAGGGCCCACCTCGTCAAAGGCTG
LOC_Os08g01400
Os.49551.1.S1_at--216--5691Chr08:254010..254034 (25 bp)
GACTTGTTCGATGACATTGTCGAGG
LOC_Os08g01400
Os.49551.1.S1_at--789--1691Chr08:253959..253983 (25 bp)
AGCCATCGCTGATCCAAAGTCTAAT
LOC_Os08g01400
Os.49551.1.S1_at--1120--7151Chr08:253941..253965 (25 bp)
GTCTAATCCAGACATCCACTGTATG
LOC_Os08g01400
Os.49551.1.S1_at--184--5011Chr08:253852..253876 (25 bp)
GCATGGTAGATAGTCGCATTAGCAC
LOC_Os08g01400
Os.49551.1.S1_at--1119--6911Chr08:253774..253798 (25 bp)
GTAGTACTCCAGCTAGGAAGGTCGT
LOC_Os08g01400
Os.49551.1.S1_at--409--6811Chr08:253739..253763 (25 bp)
GTTTTCTTGTAATTCAGGCACTTCT
LOC_Os08g01400
Os.49551.1.S1_at--243--131Chr08:253728..253752 (25 bp)
ATTCAGGCACTTCTCTAGCTTAGCT
LOC_Os08g01400
Os.49551.1.S1_at--801--4871Chr08:253706..253730 (25 bp)
GCTATATCACTCATCTAGTCACTGT
LOC_Os08g01400
Os.49551.1.S1_at--892--6393Chr08:253670..253694 (25 bp)
GATCGATCAATATATATGCCCATGC
LOC_Os08g01400
Target Sequence 
GCATCCTGATGTACGAGTTCCGCCAGGCCAGGGCCGCCATCGACAGCCTCAAGGCCGACCTCGACAGGGTCGTCGCCACC
GGCACCGGCTACGCCCACCGGGAGGACATGGCCGAGAGGGCCCACCTCGTCAAAGGCTGCCTCGCCATGCTCAGCTCCGG
CGCCGAGGCCGTCATCGCCGAGCTCGACGACTTGTTCGATGACATTGTCGAGGGCAGGAAGATGCTCTCCGACCTCTGCA
GCCATCGCTGATCCAAAGTCTAATCCAGACATCCACTGTATGATTATTAATTATTGCCACAAACAGATTATTAACATCAT
GCATGCATATTACTAATATAATTAATGCATGGTAGATAGTCGCATTAGCACAAGATGCATGGATGAGTTTGCTACTAGTA
ATTAACAAATGAGAATTACTTAATGTAGTACTCCAGCTAGGAAGGTCGTAGGTGTTTTTGTTTTCTTGTAATTCAGGCAC
TTCTCTAGCTTAGCTATATCACTCATCTAGTCACTGTATCTAGCTATAGATCGATCAATATATATGCCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis