Browse Element(s) Details


OsAffx.24882.1.S1_at

Description tigr:9630.m05492
TID=OsAffx.24882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NLI interacting factor-like phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5527011/11NLI interacting factor-like phosphatase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008420molecular_functionCTD phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24882.1.S1_at--438--6031Chr02:33838697..33838721 (25 bp)
GAGATGGAGCGAGCCGCGGTGGTCA
LOC_Os02g55270
OsAffx.24882.1.S1_at--86--9891Chr02:33838790..33838814 (25 bp)
TACTTCGCGTCGAGCCGCGGCAAGT
LOC_Os02g55270
OsAffx.24882.1.S1_at--944--5171Chr02:33838809..33838833 (25 bp)
GCAAGTTCGGGATCGCGGTGAGGTC
LOC_Os02g55270
OsAffx.24882.1.S1_at--998--5871Chr02:33838841..33838865 (25 bp)
GAGCGGAACCGGGACGAGAGCGAGC
LOC_Os02g55270
OsAffx.24882.1.S1_at--1117--111Chr02:33838918..33838942 (25 bp)
ATTCTTCTCCGGCTCGGTGTGCAGC
LOC_Os02g55270
OsAffx.24882.1.S1_at--483--10591Chr02:33838922..33838946 (25 bp)
TTCTCCGGCTCGGTGTGCAGCGGCA
LOC_Os02g55270
OsAffx.24882.1.S1_at--420--8151Chr02:33839142..33839166 (25 bp)
GGAAACCGGTCACCCGCAAGGCGCT
LOC_Os02g55270
OsAffx.24882.1.S1_at--163--7551Chr02:33839169..33839193 (25 bp)
GGGCGCAGACCCACGGCAAGTTTCT
LOC_Os02g55270
OsAffx.24882.1.S1_at--582--1391Chr02:33839175..33839199 (25 bp)
AGACCCACGGCAAGTTTCTCGTTGA
LOC_Os02g55270
OsAffx.24882.1.S1_at--420--1911Chr02:33839181..33839205 (25 bp)
ACGGCAAGTTTCTCGTTGACACGGA
LOC_Os02g55270
OsAffx.24882.1.S1_at--389--10591Chr02:33839190..33839214 (25 bp)
TTCTCGTTGACACGGAGTGGATCAA
LOC_Os02g55270
Target Sequence 
GAGATGGAGCGAGCCGCGGTGGTCATCCTCGACGACACGGCGGAGGTCTGGAAGGGGTACAGGGACAACCTGATCGAGAT
GGAGAGGTACCTCTACTTCGCGTCGAGCCGCGGCAAGTTCGGGATCGCGGTGAGGTCCCTGGCGGAGCGGAACCGGGACG
AGAGCGAGCGCGAGGGCGCGCTCGCCGTGGCGCTGCGCGTCCTGCGGCGAGTCCATGGGGAATTCTTCTCCGGCTCGGTG
TGCAGCGGCAGCTTCGCGGACGTCAGGGAGGTGATCAGGCAGGCGCGGCGCGAGGTGCTGCGCGGGTGCACGGTGGCGTT
CACCGGGGTCATCCCAAGCGGCGACGGCGGCCGCGCCAGCGACCACCCCGTGTGGAGGAGAGCCGAGCAGCTCGGCGCCA
CCTGCGCCGACGACGTCGGCGAGGGGGTCACCCACTTCGTCGCCGGGAAACCGGTCACCCGCAAGGCGCTGTGGGCGCAG
ACCCACGGCAAGTTTCTCGTTGACACGGAGTGGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis