Browse Element(s) Details


Os.11760.1.S2_at

Description gb:AK119386.1
DB_XREF= gi:37989009
TID=Os.11760.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B12, full insert sequence.
FL= gb:AK119386.1 gb:AK073025.1 gb:AK061820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5530010/11CCR4-NOT transcription complex subunit 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11760.1.S2_at--834--6771Chr02:33850639..33850663 (25 bp)
GTTAGCTACATCTTCTCGTTTTATT
LOC_Os02g55300
Os.11760.1.S2_at--719--8511Chr02:33850675..33850699 (25 bp)
TGGACACTACCTTAATCCCGGTTGA
LOC_Os02g55300
Os.11760.1.S2_at--830--7911Chr02:33850694..33850718 (25 bp)
GGTTGATTGCCATTGTCCAGTTTAT
LOC_Os02g55300
Os.11760.1.S2_at--234--10091Chr02:33850732..33850756 (25 bp)
TATAATCGGTCCTTCTTAAGTTCGG
LOC_Os02g55300
Os.11760.1.S2_at--1000--10591Chr02:33850752..33850776 (25 bp)
TTCGGACATTGTTGGAGAGCTATTC
LOC_Os02g55300
Os.11760.1.S2_at--62--9212Chr09:5481097..5481605 (25 bp)
TGCCAACTTGTGCATGGGTTCAATT
NONE
Os.11760.1.S2_at--246--5731Chr02:33851001..33851025 (25 bp)
GACTGAGAAGCCTTGTGCACGCATG
LOC_Os02g55300
Os.11760.1.S2_at--540--5091Chr02:33851017..33851041 (25 bp)
GCACGCATGAACTTTCTTCATCACA
LOC_Os02g55300
Os.11760.1.S2_at--568--851Chr02:33851047..33851071 (25 bp)
ATGGCAGCAGCAGCCTATCTCAATT
LOC_Os02g55300
Os.11760.1.S2_at--745--6031NONE
GAGATCGAACCATCTGCATTGCACA
NONE
Os.11760.1.S2_at--991--4911Chr02:33851116..33851140 (25 bp)
GCTTCCTCCCATGGATAATGCAAAT
LOC_Os02g55300
Target Sequence 
GTTAGCTACATCTTCTCGTTTTATTAAGACTCAACTTGGACACTACCTTAATCCCGGTTGATTGCCATTGTCCAGTTTAT
TTAAATTCATGTATATAATCGGTCCTTCTTAAGTTCGGACATTGTTGGAGAGCTATTCTGAATAAAGGTAATGGTGGCTA
ACAAGAAACAAGGTAAGGATTGTTAGAAACTGGAGAAGTTTGGGTGCCAAAAAGCTTCAAAAGTATTGAAATTGTCTAAT
GTTTCATATTTTGCAGGTAAACCTGATAATACTTTCCTAGTGTATCATTTTTTAACGGGATGCATTTCTGGTGTTAAAAT
GTGGTACTCGTCATGCCAACTTGTGCATGGGTTCAATTTGAAGACTGAGAAGCCTTGTGCACGCATGAACTTTCTTCATC
ACAGATTGATGGCAGCAGCAGCCTATCTCAATTCCCCAAATCTCCAGGGATGAGATCGAACCATCTGCATTGCACAAGCT
TCCTCCCATGGATAATGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11760.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis