Browse Element(s) Details


Os.52557.1.S1_at

Description gb:AK067973.1
DB_XREF= gi:32977991
TID=Os.52557.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128G24, full insert sequence.
FL= gb:AK067973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5533010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein
LOC_Os02g55340Os.48038.1.S1_at11/112+33879979..33887758HEAT repeat family protein, expressed
LOC_Os02g55350OsAffx.199.1.S1_at1/112+33894920..33902185retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52557.1.S1_at--13--9611Chr02:33871349..33871373 (25 bp)
TCATCAACGCGATGGAGAAGCTCTC
LOC_Os02g55330
Os.52557.1.S1_at--290--5411Chr02:33871333..33871357 (25 bp)
GAAGCTCTCCAAGGATAAGACAGCC
LOC_Os02g55330
Os.52557.1.S1_at--1021--9771Chr02:33871318..33871342 (25 bp)
TAAGACAGCCAAAGCGCCCCAGTTG
LOC_Os02g55330
Os.52557.1.S1_at--875--4491Chr02:33871291..33871315 (25 bp)
GCCGTCGTCCTCGAACAATAACATG
LOC_Os02g55330
Os.52557.1.S1_at--644--9811NONE
TAACATGACCGAAGTAGAACACAAC
NONE
Os.52557.1.S1_at--83--2191Chr02:33871253..33871277 (25 bp)
ACAACAAGTGCTTGAGATTCGGCAA
LOC_Os02g55330
Os.52557.1.S1_at--69--5951Chr02:33871214..33871238 (25 bp)
GAGCAGCTGATTCCATCGTTTTTAG
LOC_Os02g55330
Os.52557.1.S1_at--242--6811Chr02:33871197..33871221 (25 bp)
GTTTTTAGCCGTTGTCACTTGTCAC
LOC_Os02g55330
Os.52557.1.S1_at--949--7091Chr02:33871184..33871208 (25 bp)
GTCACTTGTCACAATCTACTAACCG
LOC_Os02g55330
Os.52557.1.S1_at--99--9911Chr02:33871168..33871192 (25 bp)
TACTAACCGTGCAATAGCTGTCGTT
LOC_Os02g55330
Os.52557.1.S1_at--783--1611Chr02:33871153..33871177 (25 bp)
AGCTGTCGTTGCTCCATGATCGTAT
LOC_Os02g55330
Target Sequence 
TCATCAACGCGATGGAGAAGCTCTCCAAGGATAAGACAGCCAAAGCGCCCCAGTTGGCGCCGTCGTCCTCGAACAATAAC
ATGACCGAAGTAGAACACAACAAGTGCTTGAGATTCGGCAAGAGATGAAACTGGAGAGCAGCTGATTCCATCGTTTTTAG
CCGTTGTCACTTGTCACAATCTACTAACCGTGCAATAGCTGTCGTTGCTCCATGATCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis