Browse Element(s) Details


Os.48038.1.S1_at

Description gb:AK112107.1
DB_XREF= gi:37988770
TID=Os.48038.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A07, full insert sequence.
FL= gb:AK112107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5534011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein
LOC_Os02g55340Os.48038.1.S1_at11/112+33879979..33887758HEAT repeat family protein, expressed
LOC_Os02g55350OsAffx.199.1.S1_at1/112+33894920..33902185retrotransposon protein, putative, unclassified
LOC_Os02g55360OsAffx.24884.1.S1_at11/112+33903146..33903442hypothetical protein
LOC_Os02g55370Os.46185.1.S1_x_at11/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55370Os.11168.1.S1_x_at6/112+33908140..3390877260S ribosomal protein L39, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48038.1.S1_at--664--8991Chr02:33880818..33880842 (25 bp)
TGAAGAATTATGTGACCCGCCTCCA
LOC_Os02g55340
Os.48038.1.S1_at--599--2811Chr02:33880724..33880748 (25 bp)
AAGATACGCTACTGGGATCAGGCCA
LOC_Os02g55340
Os.48038.1.S1_at--1143--4411Chr02:33880604..33880625 (22 bp)
GCCAGGCCTGAGCAAAGCTTCTGTA
LOC_Os02g55340
Os.48038.1.S1_at--694--5591Chr02:33880311..33880335 (25 bp)
GAAATATGCAGACAGCCCACGACGG
LOC_Os02g55340
Os.48038.1.S1_at--855--1931Chr02:33880290..33880314 (25 bp)
ACGGCGTCGAGGCTAACCCACAAGA
LOC_Os02g55340
Os.48038.1.S1_at--23--9291Chr02:33880200..33880224 (25 bp)
TCCGTGAACTTGTCGAGCCACAGGC
LOC_Os02g55340
Os.48038.1.S1_at--762--1691Chr02:33880185..33880209 (25 bp)
AGCCACAGGCTCATCTCGGGAAGCA
LOC_Os02g55340
Os.48038.1.S1_at--102--9491Chr02:33880120..33880144 (25 bp)
TCTGCTCCGTCCATCTGGTAAGAGA
LOC_Os02g55340
Os.48038.1.S1_at--94--871Chr02:33880096..33880120 (25 bp)
ATGGCGTCCCCATGTACATATTAAC
LOC_Os02g55340
Os.48038.1.S1_at--521--10491Chr02:33880076..33880100 (25 bp)
TTAACCTCTGCTTAATTAGGCTTAC
LOC_Os02g55340
Os.48038.1.S1_at--156--931Chr02:33880059..33880083 (25 bp)
AGGCTTACACTGTTGCACATGACAT
LOC_Os02g55340
Target Sequence 
TGAAGAATTATGTGACCCGCCTCCACGCCTTCCAGGCATCCGCTCTTTGCTTCCTTTGCCAGGAGGGGACCTATTGACCG
GAGGAACGGACTTGAAGATACGCTACTGGGATCAGGCCAGGCCTGAGCAAAGCTTCTGTATAGCCGNTCCCTCGNTGAAA
GGANCTGGAAACGACGAGACGTACGATATAAGATCCAGCTCTNGTGTACAAGTTGTGCAGGAAATATGCAGACAGCCCAC
GACGGCGTCGAGGCTAACCCACAAGACGCAGCTCGCCATGGCCGCCGCGGATTCCGCGGGGTGCCACCGAGACGCGATCC
TCGCGCTGGCCTCCGTGAACTTGTCGAGCCACAGGCTCATCTCGGGAAGCAGAGACGGCGCCGTCAAGGNGTGGAAGTAG
CCCGCCTCTCCTCTGCTCCGTCCATCTGGTAAGAGATGGCGTCCCCATGTACATATTAACCTCTGCTTAATTAGGCTTAC
ACTGTTGCACATGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis