Browse Element(s) Details


Os.11168.1.S1_x_at

Description gb:AK120800.1
DB_XREF= gi:37990423
TID=Os.11168.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=24
UG=Os.11168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012L04, full insert sequence.
FL= gb:AK120800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g553706/1160S ribosomal protein L39, putative, expressed
LOC_Os02g553901/1160S ribosomal protein L39, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55340Os.48038.1.S1_at11/112+33879979..33887758HEAT repeat family protein, expressed
LOC_Os02g55350OsAffx.199.1.S1_at1/112+33894920..33902185retrotransposon protein, putative, unclassified
LOC_Os02g55360OsAffx.24884.1.S1_at11/112+33903146..33903442hypothetical protein
LOC_Os02g55370Os.46185.1.S1_x_at11/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55370Os.11168.1.S1_x_at6/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55380NANA2+33914371..33915144AP2 domain containing protein, expressed
LOC_Os02g55390Os.46185.1.S1_x_at3/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55390Os.11168.1.S1_x_at1/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55400Os.50459.1.S1_at10/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55400OsAffx.5813.1.S1_x_at1/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55410Os.48072.1.S1_at10/112+33930357..33934637DNA replication licensing factor MCM5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11168.1.S1_x_at--692--4372Chr02:33922649..33922673 (25 bp)
CCACAAGACCTTCCGCATCAAGAAG
LOC_Os02g55390
Os.11168.1.S1_x_at--788--3372Chr02:33922874..33922898 (25 bp)
CACCAAGCTTGGGTTCTGAGCAGGA
NONE
Os.11168.1.S1_x_at--124--3951Chr02:33922920..33922944 (25 bp)
CGGAGGCTAGGGTTACTGAGTTATC
NONE
Os.11168.1.S1_x_at--1104--7671Chr02:33922929..33922953 (25 bp)
GGGTTACTGAGTTATCTGCATCATT
NONE
Os.11168.1.S1_x_at--1089--3851Chr02:33922935..33922959 (25 bp)
CTGAGTTATCTGCATCATTTTGTTT
NONE
Os.11168.1.S1_x_at--866--6272Chr02:33922964..33922988 (25 bp)
GATGTTTCAGTGTTTATGCAAGCTT
NONE
Os.11168.1.S1_x_at--1024--652Chr02:33922979..33923003 (25 bp)
ATGCAAGCTTAGGATGTGATTCCAG
NONE
Os.11168.1.S1_x_at--1058--7391Chr02:33922994..33923018 (25 bp)
GTGATTCCAGGATGCTTTTTATTAA
NONE
Os.11168.1.S1_x_at--905--6931Chr02:33923039..33923063 (25 bp)
GTAGTTGTACTCTGGTTTACTGAGG
NONE
Os.11168.1.S1_x_at--431--6812Chr02:33923053..33923077 (25 bp)
GTTTACTGAGGATACCATGCTATGC
NONE
Os.11168.1.S1_x_at--282--6492Chr02:33923063..33923087 (25 bp)
GATACCATGCTATGCTGTGCTGAGT
NONE
Target Sequence 
CCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGC
GGACCGACAACACCATCAGGTACAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTAGC
ACCGGTTGCTGCCTGCGGAGGCTAGGGTTACTGAGTTATCTGCATCATTTTGTTTTATGGATGTTTCAGTGTTTATGCAA
GCTTAGGATGTGATTCCAGGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGTGTAGTTGTACTCTGGTTTACTGAGGA
TACCATGCTATGCTGTGCTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11168.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis