Browse Element(s) Details


Os.50459.1.S1_at

Description gb:AK121272.1
DB_XREF= gi:37990895
TID=Os.50459.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107A16, full insert sequence.
FL= gb:AK121272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5540010/11ATPase 8, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55350OsAffx.199.1.S1_at1/112+33894920..33902185retrotransposon protein, putative, unclassified
LOC_Os02g55360OsAffx.24884.1.S1_at11/112+33903146..33903442hypothetical protein
LOC_Os02g55370Os.46185.1.S1_x_at11/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55370Os.11168.1.S1_x_at6/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55380NANA2+33914371..33915144AP2 domain containing protein, expressed
LOC_Os02g55390Os.46185.1.S1_x_at3/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55390Os.11168.1.S1_x_at1/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55400Os.50459.1.S1_at10/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55400OsAffx.5813.1.S1_x_at1/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55410Os.48072.1.S1_at10/112+33930357..33934637DNA replication licensing factor MCM5, putative, expressed
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50459.1.S1_at--410--7231Chr02:33929884..33929903 (20 bp)
GTCGCCAGACTGAGGGAGTTGCACA
LOC_Os02g55400
Os.50459.1.S1_at--524--5731Chr02:33929886..33929910 (25 bp)
GACTGAGGGAGTTGCACACGCTCAA
LOC_Os02g55400
Os.50459.1.S1_at--204--7451Chr02:33929978..33930002 (25 bp)
GTGTAACATACAGCATGCCATCGAT
LOC_Os02g55400
Os.50459.1.S1_at--682--1531Chr02:33929989..33930013 (25 bp)
AGCATGCCATCGATGTGTTGTTGTT
LOC_Os02g55400
Os.50459.1.S1_at--1006--8771Chr02:33930094..33930118 (25 bp)
TGTTTCTTCCCTTCTTTGTATTTTG
LOC_Os02g55400
Os.50459.1.S1_at--133--251Chr02:33930129..33930153 (25 bp)
ATAGTTCCCGATACAACAGGTGGTG
LOC_Os02g55400
Os.50459.1.S1_at--735--4191Chr02:33930135..33930159 (25 bp)
CCCGATACAACAGGTGGTGCACTTT
LOC_Os02g55400
Os.50459.1.S1_at--1085--6791Chr02:33930216..33930240 (25 bp)
GTTATTGTTCCCATTGCAGATTTGC
LOC_Os02g55400
Os.50459.1.S1_at--353--6531Chr02:33930234..33930258 (25 bp)
GATTTGCAGTCTATCAACTTTGCCT
LOC_Os02g55400
Os.50459.1.S1_at--425--2531Chr02:33930249..33930273 (25 bp)
AACTTTGCCTCAACTCAGTCTGTAT
LOC_Os02g55400
Os.50459.1.S1_at--855--9631NONE
TCAGTCTGTATACTACTGTTTAGCC
NONE
Target Sequence 
GTCGCCAGACTGAGGGAGTTGCACACGCTCAAGGGGCACGTAGAGTCGGTGGTGAAGCTCAAGGGGCTCGACATCGACAC
AATCCAACAGAGNTACACCGTGTAACATACAGCATGCCATCGATGTGTTGTTGTTGTTGTTCATACCTGTGTTTTACTNC
TCCCCATCTGCAAGTTANTTTGGAGATGGGGGTTTCGACTTGTGTTTTGNCATAGATGTTTCTTCCCTTCTTTGTATTTT
GTTAACAGGGNATAGTTCCCGATACAACAGGTGGTGCACTTTTNAGTATAGTCAAGTTATTTGTAAGATTTTGGCTTTAA
GCCGGTTTTTTTGGCAATGTTATTGTTCCCATTGCAGATTTGCAGTCTATCAACTTTGCCTCAACTCAGTCTGTATACTA
CTGTTTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis