Browse Element(s) Details


Os.11857.1.S1_at

Description gb:AK069053.1
DB_XREF= gi:32979077
TID=Os.11857.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11857 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004J10, full insert sequence.
FL= gb:AK069053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5544011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55400Os.50459.1.S1_at10/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55400OsAffx.5813.1.S1_x_at1/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55410Os.48072.1.S1_at10/112+33930357..33934637DNA replication licensing factor MCM5, putative, expressed
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11857.1.S1_at--410--9591Chr02:33951836..33951860 (25 bp)
TCTTGTACTCGATCAACTATCTTGT
LOC_Os02g55440
Os.11857.1.S1_at--1029--9831Chr02:33951803..33951827 (25 bp)
TAAAGAGCTTGAGTGGACCTGTGTC
LOC_Os02g55440
Os.11857.1.S1_at--276--8311Chr02:33951762..33951786 (25 bp)
GGCTACTCACTCTTCATGGTTATTG
LOC_Os02g55440
Os.11857.1.S1_at--1142--7471Chr02:33951714..33951738 (25 bp)
GTGGGATTCATTTCATCATTCTGCT
LOC_Os02g55440
Os.11857.1.S1_at--1010--2031Chr02:33951683..33951707 (25 bp)
ACTATCTTTTCTCATCCGTGAAAGC
LOC_Os02g55440
Os.11857.1.S1_at--983--5031Chr02:33951660..33951684 (25 bp)
GCAGATTAAGCTCATCCCGATGCAG
LOC_Os02g55440
Os.11857.1.S1_at--511--1571Chr02:33951571..33951595 (25 bp)
AGCTCATGTCATCTTTTGGTATACA
LOC_Os02g55440
Os.11857.1.S1_at--270--9091Chr02:33951486..33951510 (25 bp)
TGCTAGCAGCTTGCACGATGTAATA
LOC_Os02g55440
Os.11857.1.S1_at--525--10311Chr02:33951418..33951442 (25 bp)
TTTCTGCTGCCATTTAGCTGTTAAG
LOC_Os02g55440
Os.11857.1.S1_at--26--2711Chr02:33951389..33951413 (25 bp)
AAGCTTAGTACTGCTGTCTGTTGCA
LOC_Os02g55440
Os.11857.1.S1_at--823--7171Chr02:33951374..33951398 (25 bp)
GTCTGTTGCAATCGTGTTTGGTATC
LOC_Os02g55440
Target Sequence 
TCTTGTACTCGATCAACTATCTTGTTTTTGACCTAAAGAGCTTGAGTGGACCTGTGTCGGCGACCCTCTATCTCGGCTAC
TCACTCTTCATGGTTATTGCTATTATGCTGGCNACTGGAACAGTGGGATTCATTTCATCATTCTGCTTCGTCCACTATCT
TTTCTCATCCGTGAAAGCAGATTAAGCTCATCCCGATGCAGAGTGTATTACTCAAATGAGAGGTGAGAATAGTGGACATC
AAAAAGTTTGTAGTCACAAAATCTTAGCTCATGTCATCTTTTGGTATACAAAGACTGAATAACTATTGTAAGCTTTACTA
GGATTTATCAATGGGTTTTATGGAGAGATGTGCTAGCAGCTTGCACGATGTAATAGAATGAATTGGTTTATTCACATTTT
GAGTCATTTTAGTTGCTCTTTCTGCTGCCATTTAGCTGTTAAGATGTAAGCTTAGTACTGCTGTCTGTTGCAATCGTGTT
TGGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis