Browse Element(s) Details


OsAffx.3079.1.S1_at

Description tigr:9630.m05511
TID=OsAffx.3079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5546011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3079.1.S1_at--616--5311Chr02:33960484..33960508 (25 bp)
GAAGTTTCTCCCCTCTAAGGTGAAG
LOC_Os02g55460
OsAffx.3079.1.S1_at--378--1031Chr02:33960501..33960525 (25 bp)
AGGTGAAGTTCTGTACGGCGTCGTT
LOC_Os02g55460
OsAffx.3079.1.S1_at--716--31Chr02:33960557..33960754 (25 bp)
ATTGGGTGGCTAGGGTTCCGCTTCT
LOC_Os02g55460
OsAffx.3079.1.S1_at--39--3711Chr02:33960566..33960763 (25 bp)
CTAGGGTTCCGCTTCTACTTCTTCA
LOC_Os02g55460
OsAffx.3079.1.S1_at--534--1711Chr02:33960791..33960815 (25 bp)
ACCAGTCAACAACAGGTGAGATACT
LOC_Os02g55460
OsAffx.3079.1.S1_at--148--6491Chr02:33960810..33960834 (25 bp)
GATACTGAGAATCATTCCTCCACAA
LOC_Os02g55460
OsAffx.3079.1.S1_at--584--9211Chr02:33960828..33960927 (25 bp)
TCCACAAAAGAGATCCTCCCTATAC
LOC_Os02g55460
OsAffx.3079.1.S1_at--97--9351Chr02:33961595..33961619 (25 bp)
TCGCGATCGGCCTTGGGACGATGAT
LOC_Os02g55460
OsAffx.3079.1.S1_at--46--3931Chr02:33961602..33961626 (25 bp)
CGGCCTTGGGACGATGATTCTGAAA
LOC_Os02g55460
OsAffx.3079.1.S1_at--15--2951Chr02:33962717..33963106 (25 bp)
AAGGCTGCTGCCTAGAGGGATTGAA
LOC_Os02g55460
OsAffx.3079.1.S1_at--27--2091Chr02:33963148..33963622 (25 bp)
ACACCAGGGTGATATTTTCTTTCTC
LOC_Os02g55460
Target Sequence 
GAAGTTTCTCCCCTCTAAGGTGAAGTTCTGTACGGCGTCGTTTGGGCTCCGATTCGAGTGTCGCGGTGCGGGGATTGGGT
GGCTAGGGTTCCGCTTCTACTTCTTCAGTCCTTGGCTGTCGGATCGGGCTACCAACCAGTCAACAACAGGTGAGATACTG
AGAATCATTCCTCCACAAAAGAGATCCTCCCTATACGAGATGGGTAACGTGAAGATCATTGCTGCCACATATGGGTGGAA
AGGGACCATGATCGCCACAGGGATCACCGTGATAGAAGCAAAAGAAGATAGCATCGTGATTCTGAATATTCTGATGATCG
CGATCGGCCTTGGGACGATGATTCTGAAAGCAGAAATCACTTCAGTTCCTCTCCTGCACATGAGGACTGCATGTTTGTAC
AATGAAAGTATTGTGGGGTTTTATCAAGATGCAACAACGGGAAGATTGAAAAGGCTGCTGCCTAGAGGGATTGAAAGGAG
AAACACTCCCAAGGAGAAGGAGAAGAGCGAGGGAAAACACCAGGGTGATATTTTCTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis