Browse Element(s) Details


Os.24273.1.A1_at

Description gb:AK102986.1
DB_XREF= gi:32988195
TID=Os.24273.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116C08, full insert sequence.
FL= gb:AK102986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5546010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24273.1.A1_at--1116--3931Chr02:33962038..33962062 (25 bp)
CGGCTGACCGACATGAATCCATCGC
LOC_Os02g55460
Os.24273.1.A1_at--319--571Chr02:33962054..33962078 (25 bp)
ATCCATCGCCACTCAGTTTTAAGTT
LOC_Os02g55460
Os.24273.1.A1_at--542--7631Chr02:33962112..33962136 (25 bp)
GGGACTTTTATCAGTTTGCCGACTC
LOC_Os02g55460
Os.24273.1.A1_at--905--10051Chr02:33962127..33962151 (25 bp)
TTGCCGACTCCACACTTTTTTGGCA
LOC_Os02g55460
Os.24273.1.A1_at--16--2951Chr02:33962717..33962824 (25 bp)
AAGGCTGCTGCCTGTAAGATTGAGA
LOC_Os02g55460
Os.24273.1.A1_at--97--3891NONE
CTGTAAGATTGAGAGGGCTGCTTCT
NONE
Os.24273.1.A1_at--515--5951Chr02:33963163..33963187 (25 bp)
GAGCAAAATCTAATCGGGAAGCACT
LOC_Os02g55460
Os.24273.1.A1_at--84--511Chr02:33963175..33963199 (25 bp)
ATCGGGAAGCACTATATCATACTGT
LOC_Os02g55460
Os.24273.1.A1_at--1141--6511Chr02:33963220..33963244 (25 bp)
GATATTGGTTTCACCTCAGTGTGAT
LOC_Os02g55460
Os.24273.1.A1_at--602--3031Chr02:33963297..33963321 (25 bp)
AATCCTATTGTCAGCATTTCATAAT
LOC_Os02g55460
Os.24273.1.A1_at--705--811Chr02:33963362..33963386 (25 bp)
ATGGTTTTACCAGACTGAAGCTCTT
LOC_Os02g55460
Target Sequence 
CGGCTGACCGACATGAATCCATCGCCACTCAGTTTTAAGTTTAACAAAGTTGCAAGGAAGTTTTCAAGATATTGGGGACT
TTTATCAGTTTGCCGACTCCACACTTTTTTGGCACCCNGAAATCACTTCAGTTCCTCTCCTGCACATGAGGACTGCATGT
TTGTACAATGAAAGTATTGTGGGGTTTTATCAAGATGCAACAACGGGAAGATTGAAAAGGCTGCTGCCTGTAAGATTGAG
AGGGCTGCTTCTGGAGGAAAAAGCNCACTACATGGGCAATGNCAATGGGAGAGGGATTNAAAGGAGAAACACTCCCAAGG
AGAAGGAGAAGAGCGAGGGAAAACNCCAGGGTGATGTGAGCAAAATCTAATCGGGAAGCACTATATCATACTGTATGATA
TATTAATACNCTATGATATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGTCAA
AAAAAAAATGAAATCCTATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTATTTTCTGAATCGATTCATGTATATGG
TTTTACCAGACTGAAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24273.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis