Browse Element(s) Details


Os.23470.1.S1_at

Description gb:CA759682
DB_XREF= gi:25803721
DB_XREF=BR060008A20B04.ab1
CLONE=BR060008A20B04.ab1
TID=Os.23470.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23470 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_178601.1 (A.thaliana) putative N-acetylglucosaminyltransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5547011/11N-acetylglucosaminyltransferase II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein
LOC_Os02g55460OsAffx.3079.1.S1_at11/112+33960452..33963689expressed protein
LOC_Os02g55460Os.24273.1.A1_at10/112+33960452..33963689expressed protein
LOC_Os02g55470Os.23470.1.S1_at11/112+33965501..33967669N-acetylglucosaminyltransferase II family protein, expressed
LOC_Os02g55480Os.18565.1.S1_at11/112+33969953..33972499Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55489NANA2+33973889..33974186NA
LOC_Os02g55500Os.6591.1.S1_at11/112+33977061..33977762expressed protein
LOC_Os02g55510Os.6591.1.S1_at11/112+33980599..33981803hypothetical protein
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008375molecular_functionacetylglucosaminyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23470.1.S1_at--226--7971Chr02:33966515..33966539 (25 bp)
GGATCTCCTGTTTACAGCCTGAGGG
LOC_Os02g55470
Os.23470.1.S1_at--1118--6171Chr02:33966547..33966571 (25 bp)
GAGGAGCGCTGCACATTTCGGCAAG
LOC_Os02g55470
Os.23470.1.S1_at--738--10291Chr02:33966562..33966586 (25 bp)
TTTCGGCAAGTGTGGCCTGCACCAA
LOC_Os02g55470
Os.23470.1.S1_at--880--1291Chr02:33966640..33966664 (25 bp)
AGATGCCATCGATAAGGTCCCTAAC
LOC_Os02g55470
Os.23470.1.S1_at--313--7771Chr02:33966655..33966679 (25 bp)
GGTCCCTAACATCAAAGCTAACTGG
LOC_Os02g55470
Os.23470.1.S1_at--637--9811Chr02:33966673..33966697 (25 bp)
TAACTGGCCAGTACATATCATCAAG
LOC_Os02g55470
Os.23470.1.S1_at--1129--2671Chr02:33966749..33966773 (25 bp)
AAGCGTGATCAGGAGCTCTGTCTCA
LOC_Os02g55470
Os.23470.1.S1_at--479--5911Chr02:33966761..33966785 (25 bp)
GAGCTCTGTCTCAGTTTTGCATACA
LOC_Os02g55470
Os.23470.1.S1_at--553--91Chr02:33966881..33966905 (25 bp)
ATTCATTCTTACACACGGTTCGATA
LOC_Os02g55470
Os.23470.1.S1_at--744--10151Chr02:33966904..33966928 (25 bp)
TATAAATAGCAGTCTTCCCTTTCCC
LOC_Os02g55470
Os.23470.1.S1_at--1038--3091Chr02:33966939..33966963 (25 bp)
AATAGCTCTTTCTTCCCAGTTGAAA
LOC_Os02g55470
Target Sequence 
GGATCTCCTGTTTACAGCCTGAGGGGACCTNGGAGGAGCGCTGCACATTTCGGCAAGTGTGGCCTGCACCAAGGCCAAGG
CTTGAGCAANGTCTGTGTGGATAANGGCGACGCGACAGTACAATTAGATGCCATCGATAAGGTCCCTAACATCAAAGCTA
ACTGGCCAGTACATATCATCAAGAGGCAGGAGGGGTATCAGGCTGGCTTCAAAGGATGGGGTGGCTGGGGTGATAAGCGT
GATCAGGAGCTCTGTCTCAGTTTTGCATACATGCACCATTTTAAAGACCCATCATNTCCTTGATGCAGGGTATAGGCACA
CGGATTTTGGCATAGCTGNCCGCCTTGNTGTATTATTGTTCGGTATNATTCATTCTTACACACGGTTCGATATAAATAGC
AGTCTTCCCTTTCCCAATTTTGTAGAATAGCTCTTTCTTCCCAGTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis