Browse Element(s) Details


Os.48072.1.S1_at

Description gb:AK073980.1
DB_XREF= gi:32984003
TID=Os.48072.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48072 (NCBI UniGene Cluster)
UG_TITLE=SS300 mRNA for MCM3, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076G02, full insert sequence.
FL= gb:AK073980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5541010/11DNA replication licensing factor MCM5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55370Os.46185.1.S1_x_at11/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55370Os.11168.1.S1_x_at6/112+33908140..3390877260S ribosomal protein L39, putative, expressed
LOC_Os02g55380NANA2+33914371..33915144AP2 domain containing protein, expressed
LOC_Os02g55390Os.46185.1.S1_x_at3/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55390Os.11168.1.S1_x_at1/112+33922540..3392289260S ribosomal protein L39, putative
LOC_Os02g55400Os.50459.1.S1_at10/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55400OsAffx.5813.1.S1_x_at1/112+33925949..33930287ATPase 8, plasma membrane-type, putative, expressed
LOC_Os02g55410Os.48072.1.S1_at10/112+33930357..33934637DNA replication licensing factor MCM5, putative, expressed
LOC_Os02g55420Os.18547.1.S1_at11/112+33936155..33940525Aspartate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g55430Os.6544.2.S1_at11/112+33947411..33949182expressed protein
LOC_Os02g55440Os.11857.1.S1_at11/112+33951290..33953880Endomembrane protein 70 containing protein, expressed
LOC_Os02g55450NANA2+33957915..33958169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006270biological_processDNA replication initiation
GO:0010182biological_processsugar mediated signaling
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48072.1.S1_at--207--1651Chr02:33930862..33930886 (25 bp)
AGCGACGCCTGATCGATGAACTAAA
LOC_Os02g55410
Os.48072.1.S1_at--922--3031Chr02:33930739..33930844 (25 bp)
AATCCATTGTGCGAAGAGCCCTTCT
LOC_Os02g55410
Os.48072.1.S1_at--1149--2771Chr02:33930683..33930707 (25 bp)
AAGAGAGAGCGCCATGTCATTGTCC
LOC_Os02g55410
Os.48072.1.S1_at--1055--6171Chr02:33930621..33930645 (25 bp)
GAGGACAACTTCTATTCAGACTGTA
LOC_Os02g55410
Os.48072.1.S1_at--689--6751Chr02:33930585..33930609 (25 bp)
GTTCACTGAAACTGTAATCTCTGGG
LOC_Os02g55410
Os.48072.1.S1_at--807--8131Chr02:33930551..33930575 (25 bp)
GGACATGTTTGAGTTTCGGTTGATC
LOC_Os02g55410
Os.48072.1.S1_at--668--7911Chr02:33930534..33930558 (25 bp)
GGTTGATCACTGACATGACCATTGT
LOC_Os02g55410
Os.48072.1.S1_at--921--5651Chr02:33930523..33930547 (25 bp)
GACATGACCATTGTAATCTGCAAGA
LOC_Os02g55410
Os.48072.1.S1_at--182--5591NONE
GAAATGCAGTCCGTCCTTGATGAAA
NONE
Os.48072.1.S1_at--1131--7231Chr02:33930484..33930507 (24 bp)
GTCCGTCCTTGATGAAACTGTAGTT
LOC_Os02g55410
Os.48072.1.S1_at--314--5531Chr02:33930429..33930453 (25 bp)
GAAACCATGTAACCAGGGTTCTGAA
LOC_Os02g55410
Target Sequence 
AGCGACGCCTGATCGATGAACTAAATAGGATGGNGATGAATGAATCCATTGTGCGAAGAGCCCTTCTGNTCATGCACCAA
AGGGATGAAGNGNAGTACAAGAGAGAGCGCCATGTCATTGTCCGGNAGGCTTGAGGTGAACTGTGGAGTATTTATAAATC
GAGGACAACTTCTATTCAGACTGTATAAGGCTATGAGTTCACTGAAACTGTAATCTCTGGGAGAAGACAAGGACATGTTT
GAGTTTCGGTTGATCACTGACATGACCATTGTAATCTGCAAGAGTAGAAGAAATGCAGTCCGTCCTTGATGAAACTGTAG
TTAAACTACAGTATTAAAGATGTAACTGTAGTGAAACCATGTAACCAGGGTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis