Browse Element(s) Details


OsAffx.24883.1.S1_at

Description tigr:9630.m05496
TID=OsAffx.24883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5531011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24883.1.S1_at--548--51Chr02:33852274..33852298 (25 bp)
ATTGTTCCAGGTAGAATCCCTGCTG
LOC_Os02g55310
OsAffx.24883.1.S1_at--250--551Chr02:33852259..33852283 (25 bp)
ATCCCTGCTGCAAACTACATGTCTG
LOC_Os02g55310
OsAffx.24883.1.S1_at--860--2111Chr02:33852243..33852267 (25 bp)
ACATGTCTGCTATGGTATGCTTGAT
LOC_Os02g55310
OsAffx.24883.1.S1_at--382--771Chr02:33852150..33852174 (25 bp)
ATGTGCGGGTTTCAAATGTTCTCCT
LOC_Os02g55310
OsAffx.24883.1.S1_at--299--2951Chr02:33852094..33852118 (25 bp)
AAGGCTGAGAGGCTTCATCTCCACA
LOC_Os02g55310
OsAffx.24883.1.S1_at--268--7791Chr02:33852058..33852082 (25 bp)
GGTGCGCATCCGAATTACAAGACTT
LOC_Os02g55310
OsAffx.24883.1.S1_at--956--5311Chr02:33851969..33851993 (25 bp)
GAAGGGCTTATCTCTGTTGAAGACT
LOC_Os02g55310
OsAffx.24883.1.S1_at--189--10751Chr02:33851953..33851977 (25 bp)
TTGAAGACTTGCCACTGGAGACCTC
LOC_Os02g55310
OsAffx.24883.1.S1_at--61--8551Chr02:33851938..33851962 (25 bp)
TGGAGACCTCCACTTGAGCTGTTGG
LOC_Os02g55310
OsAffx.24883.1.S1_at--236--8011Chr02:33851915..33851939 (25 bp)
GGAGGCCATTGCAAAGTATTTCGAG
LOC_Os02g55310
OsAffx.24883.1.S1_at--213--2711Chr02:33851828..33851852 (25 bp)
AAGCTTGCCCCTGTACAAGTCATTG
LOC_Os02g55310
Target Sequence 
ATTGTTCCAGGTAGAATCCCTGCTGCAAACTACATGTCTGCTATGGTATGCTTGATAAAAGTTGGCGACATTGGTCGGGC
CGAGTGGACCTTTGGAAGCTGGGAAGCAGAAAGCAAGAAGCACGATGTGCGGGTTTCAAATGTTCTCCTTGGTGCTTATG
TGAGGAATGGATGGATCGAAAAGGCTGAGAGGCTTCATCTCCACATGCTAGAGAAAGGTGCGCATCCGAATTACAAGACT
TGGGAGATACTGATGGAGGGATTTGTTCAGAGTAAGCAGATGGATAAAGCTGTCAATGCCATGAAGAAGGGCTTATCTCT
GTTGAAGACTTGCCACTGGAGACCTCCACTTGAGCTGTTGGAGGCCATTGCAAAGTATTTCGAGGAGCAAGGCAGTGTGG
AGGATGCAGATAGATTCATAAAGGTTCTTCAAAAGTTCAACTTGACAAGCTTGCCCCTGTACAAGTCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis