Browse Element(s) Details


OsAffx.24964.4.S1_x_at

Description tigr:9631.m00369
TID=OsAffx.24964.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0456011/11hypothetical protein
LOC_Os02g552901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24964.4.S1_x_at--629--1992Chr03:2105634..2105658 (25 bp)
ACTCGTTCTACGACGGGCTCTACGT
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--705--8991Chr03:2105565..2105589 (25 bp)
TGAAGCAGAACCTGTCGCTGCTCCT
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--232--7392Chr03:2105497..2105521 (25 bp)
GTGATGAAGGCCTCGTTCCAGGCGT
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--625--6691Chr03:2105483..2105507 (25 bp)
GTTCCAGGCGTTCTTGCTCGTCCTC
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--623--971Chr03:2105440..2105464 (25 bp)
AGGAGCTTCACGAAGGAGGACCACG
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--833--951Chr03:2105403..2105427 (25 bp)
AGGACTTCCGGAGCCTGAAGCGCGC
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--457--8991Chr03:2105388..2105412 (25 bp)
TGAAGCGCGCCTTCTGCACGCGCGG
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--161--4754Chr11:1940296..1940320 (25 bp)
GCTGAGCATCGCGTGCGAGTTGAAC
NONE
OsAffx.24964.4.S1_x_at--1083--591Chr03:2105212..2105236 (25 bp)
ATGCCGTTGCCGGAGACGACATGGC
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--231--4791Chr03:2105150..2105174 (25 bp)
GCTCTGCCACCGTGACGACGAGGTG
LOC_Os03g04560
OsAffx.24964.4.S1_x_at--473--5771Chr03:2105134..2105158 (25 bp)
GACGAGGTGGCGAGCCACTACTTGA
LOC_Os03g04560
Target Sequence 
ACTCGTTCTACGACGGGCTCTACGTGGGCGGCGTCGCCGACGCCCGCATCCGCCCGGCGCTCCGCACGCTGAAGCAGAAC
CTGTCGCTGCTCCTCTCCGTCCTCGTCGACCGCGCGCAGCCGGTGGCGGTGCGGGAGGTGATGAAGGCCTCGTTCCAGGC
GTTCTTGCTCGTCCTCGTCGCCGGCGGCGGCGACAGGAGCTTCACGAAGGAGGACCACGGCATGGTGGAGGAGGACTTCC
GGAGCCTGAAGCGCGCCTTCTGCACGCGCGGCGAGGGAGTGGTGACCGAGGAGGTGGTCGACGGCGAGGCGGAGGCGGCA
GAGAGCGTCGTGGCGCTCATGGGGCAAACGGCGGAGCAGCTCGTGGAGGAGCTGAGCATCGCGTGCGAGTTGAACGGCAC
GGCGAGCTCCGCCGGCCAGAGGATGCCGTTGCCGGAGACGACATGGCGGTGGAGCCGCACGGACCCGGACACGATCCTCC
GCGTGCTCTGCCACCGTGACGACGAGGTGGCGAGCCACTACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24964.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis