Browse Element(s) Details


Os.17182.1.S1_at

Description gb:AK072119.1
DB_XREF= gi:32982142
TID=Os.17182.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17182 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123D02, full insert sequence.
FL= gb:AK072119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0457011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed
LOC_Os03g04600Os.10015.1.S1_s_at11/113+2124876..2129630expressed protein
LOC_Os03g04600Os.10015.1.S1_at11/113+2124876..2129630expressed protein
LOC_Os03g04610Os.20338.1.S1_at3/113+2133780..2134692expressed protein
LOC_Os03g04620Os.9661.1.S1_at11/113+2138442..2142449CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17182.1.S1_at--131--9331Chr03:2111476..2111500 (25 bp)
TCGCGCTCAGCAGCAGGTACAGGTA
LOC_Os03g04570
Os.17182.1.S1_at--954--6991Chr03:2111460..2111484 (25 bp)
GTACAGGTACAAGGTCGAGTCGACG
LOC_Os03g04570
Os.17182.1.S1_at--185--6571Chr03:2111388..2111412 (25 bp)
GATTCAGAACTGATTATACTCTGTA
LOC_Os03g04570
Os.17182.1.S1_at--253--4831Chr03:2111351..2111375 (25 bp)
GCTCAACTATGAACAATGCAACTCG
LOC_Os03g04570
Os.17182.1.S1_at--424--651Chr03:2111336..2111360 (25 bp)
ATGCAACTCGCATGCAGTACAGTTA
LOC_Os03g04570
Os.17182.1.S1_at--513--5031Chr03:2111323..2111347 (25 bp)
GCAGTACAGTTAGATTGGTCCGGAC
LOC_Os03g04570
Os.17182.1.S1_at--1049--8411Chr03:2111308..2111332 (25 bp)
TGGTCCGGACTATAAACTTTTCAGG
LOC_Os03g04570
Os.17182.1.S1_at--328--10591Chr03:2111279..2111303 (25 bp)
TTCTGTCATGCAGTCATCCTGATGA
LOC_Os03g04570
Os.17182.1.S1_at--1082--5531Chr03:2111220..2111244 (25 bp)
GAAAGGTAGTAATATTCTTCATCTG
LOC_Os03g04570
Os.17182.1.S1_at--1124--10151Chr03:2111157..2111181 (25 bp)
TATCTCCAGTCAGTATCATTTCTTG
LOC_Os03g04570
Os.17182.1.S1_at--1117--2291Chr03:2111128..2111152 (25 bp)
AAAGGTGTAAATCGGTATCAAATAT
LOC_Os03g04570
Target Sequence 
TCGCGCTCAGCAGCAGGTACAGGTACAAGGTCGAGTCGACGGAGACGATCGACATCGCCNGTGGACGTGAAGGGTGACAC
NAGCCNAAAAAGATTCAGAACTGATTATACTCTGTAAAAAAAAAAATCAGCTCAACTATGAACAATGCAACTCGCATGCA
GTACAGTTAGATTGGTCCGGACTATAAACTTTTCAGGTTAATTCTGTCATGCAGTCATCCTGATGAAAAAATATACCCAA
GAATATTAATCTTGAAAGGGGAAAGGTAGTAATATTCTTCATCTGNATGAAATTTGTTAACCTTTCTAGAAAGGAGAAAA
ATATATCTCCAGTCAGTATCATTTCTTGGGGAAAAGGTGTAAATCGGTATCAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis