Browse Element(s) Details


OsAffx.24964.3.S1_x_at

Description gb:NM_192302.1
DB_XREF= gi:34911687
GEN=P0510C12.34
TID=OsAffx.24964.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0510C12.34 (P0510C12.34), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g022401/11expressed protein
LOC_Os03g045601/11hypothetical protein
LOC_Os10g372401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24964.3.S1_x_at--385--8851Chr01:26261646..26261670 (25 bp)
TGATCGCGAGCTCCGCGGTCGGACA
NONE
OsAffx.24964.3.S1_x_at--628--1992Chr03:2105634..2105658 (25 bp)
ACTCGTTCTACGACGGGCTCTACGT
LOC_Os03g04560
OsAffx.24964.3.S1_x_at--774--8391Chr01:26261520..26261544 (25 bp)
GGCGCTCCGCACGTTGAAGCAGAAC
NONE
OsAffx.24964.3.S1_x_at--589--10751Chr01:26261507..26261531 (25 bp)
TTGAAGCAGAACATGTCGCTGCTCC
NONE
OsAffx.24964.3.S1_x_at--228--4611Chr01:26261370..26261394 (25 bp)
GCGACGGCAAAGGAGCAGCTCAACG
NONE
OsAffx.24964.3.S1_x_at--915--3251Chr01:26261350..26261374 (25 bp)
CAACGGGAGCTACTGGAGCACAACG
NONE
OsAffx.24964.3.S1_x_at--543--1571Chr01:26261343..26261367 (25 bp)
AGCTACTGGAGCACAACGGGCTGCT
NONE
OsAffx.24964.3.S1_x_at--164--2211Chr01:26261331..26261355 (25 bp)
ACAACGGGCTGCTGGGTGGCGAGGA
NONE
OsAffx.24964.3.S1_x_at--1157--7211Chr01:26261291..26261315 (25 bp)
GTCGCGGGCAGGCAACCGGTGGCCA
NONE
OsAffx.24964.3.S1_x_at--191--8473Chr10:19603212..19603236 (25 bp)
TGGCGCTGCTCAAGATCCGGTCGGA
LOC_Os10g37240
OsAffx.24964.3.S1_x_at--868--551Chr01:26261239..26261263 (25 bp)
ATCCGGTCGGAGATGGACGTCGCCT
NONE
Target Sequence 
TGATCGCGAGCTCCGCGGTCGGACACGTCGCCGAGGTCGCCGCGTACCGCCTCATCTTCTCAACTCGCACCACTCGTTCT
ACGACGGGCTCTACGTCGGCGGCGTCGCCGACGCCCGCATCCGCCCGGCGCTCCGCACGTTGAAGCAGAACATGTCGCTG
CTCCTCTCCGTGCTCATCGACCGCGTGCAGCCGGTGGCGGTGCAGGAGGCGAGCGAAGCAGCCAGGCGGAGCGACGGCAA
AGGAGCAGCTCAACGGGAGCTACTGGAGCACAACGGGCTGCTGGGTGGCGAGGAGGGCGACCGGAGCGGGTCGCGGGCAG
GCAACCGGTGGCCACGGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGAGATGGACGTCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24964.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis