Browse Element(s) Details


Os.52254.1.S1_at

Description gb:AK065925.1
DB_XREF= gi:32975943
TID=Os.52254.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047E20, full insert sequence.
FL= gb:AK065925.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0227011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52254.1.S1_at--598--9531Chr03:754665..754689 (25 bp)
TCTAGCAAACCCCTTGGACATATGG
LOC_Os03g02270
Os.52254.1.S1_at--423--5351Chr03:754722..754746 (25 bp)
GAAGATATCGTTTCAGTGTCTGCAT
LOC_Os03g02270
Os.52254.1.S1_at--540--1111Chr03:754736..754760 (25 bp)
AGTGTCTGCATGCTCCGATCTAACA
LOC_Os03g02270
Os.52254.1.S1_at--334--8611Chr03:754769..754793 (25 bp)
TGGTGCTGGCCTTTGTATAGAAACA
LOC_Os03g02270
Os.52254.1.S1_at--1092--3171Chr03:754792..754816 (25 bp)
CAATTCACGGGCCTTTGTTCTTGGT
LOC_Os03g02270
Os.52254.1.S1_at--1067--10711Chr03:754984..755008 (25 bp)
TTGCTGATACCTGGGAGTCTCTTGA
LOC_Os03g02270
Os.52254.1.S1_at--648--751Chr03:755131..755155 (25 bp)
ATGTCCATTTTAACCACCCATATTC
LOC_Os03g02270
Os.52254.1.S1_at--249--71Chr03:755170..755194 (25 bp)
ATTGCTCCGAGTGTTTTCTTCCTTA
LOC_Os03g02270
Os.52254.1.S1_at--1056--10551Chr03:755185..755209 (25 bp)
TTCTTCCTTATCTCGCATCTGTAGA
LOC_Os03g02270
Os.52254.1.S1_at--211--2231Chr03:755212..755236 (25 bp)
ACAAGTTGATCTGTAGGTCCCTACC
LOC_Os03g02270
Os.52254.1.S1_at--684--3071Chr03:755245..755269 (25 bp)
AATCATAGGCTACGTCCGACACATT
LOC_Os03g02270
Target Sequence 
TCTAGCAAACCCCTTGGACATATGGGGAGAAGCAAAAAATATATTAAAGTAGCTGTTGAAGATATCGTTTCAGTGTCTGC
ATGCTCCGATCTAACACTGCCACCTGGTGCTGGCCTTTGTATAGAAACAATTCACGGGCCTTTGTTCTTGGTTGCTGATA
CCTGGGAGTCTCTTGATGGTTGGTTAGATGCTATACGCNTAGTGTACACCATATTTGCACGAGGAAAAAGTGATGTATTG
GCAGGTATCATTACTGGTTGATCTATTGTTGTATGTACGAGTGCGTCGAGCAACAGATATGTCCATTTTAACCACCCATA
TTCTTTTAATCAGCTTGATTGCTCCGAGTGTTTTCTTCCTTATCTCGCATCTGTAGAGTACAAGTTGATCTGTAGGTCCC
TACCAAAGTACCAATCATAGGCTACGTCCGACACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis