Browse Element(s) Details


OsAffx.31396.1.S1_at

Description tigr:9639.m03630
TID=OsAffx.31396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3977011/11hypothetical protein
LOC_Os03g022601/11Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39740OsAffx.31393.1.S1_at11/1111+23182070..23183273hypothetical protein
LOC_Os11g39750NANA11+23200564..23201127hypothetical protein
LOC_Os11g39760OsAffx.19260.1.S1_at11/1111+23202457..23202879hypothetical protein
LOC_Os11g39770OsAffx.31396.1.S1_at11/1111+23203960..23204597hypothetical protein
LOC_Os11g39780OsAffx.19261.1.S1_at11/1111+23206355..23206933expressed protein
LOC_Os11g39790OsAffx.22848.3.S1_x_at1/1111+23212631..23218755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39800OsAffx.31394.1.S1_at10/1111+23223871..23224786hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0009532cellular_componentplastid stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31396.1.S1_at--484--871Chr11:23204539..23204563 (25 bp)
ATGGCCAGCAGGAGGCGTGCCCTAA
LOC_Os11g39770
OsAffx.31396.1.S1_at--261--1511Chr11:23204533..23204557 (25 bp)
AGCAGGAGGCGTGCCCTAACTCCGA
LOC_Os11g39770
OsAffx.31396.1.S1_at--390--8011Chr11:23204530..23204553 (24 bp)
GGAGGCGTGCCCTAACTCCGACGGC
LOC_Os11g39770
OsAffx.31396.1.S1_at--891--1751Chr11:23204264..23204288 (25 bp)
ACCTGGGCAAATCCTGGGCCAAGTT
LOC_Os11g39770
OsAffx.31396.1.S1_at--871--8631Chr11:23204261..23204285 (25 bp)
TGGGCAAATCCTGGGCCAAGTTCCG
LOC_Os11g39770
OsAffx.31396.1.S1_at--727--2271Chr11:23204256..23204280 (25 bp)
AAATCCTGGGCCAAGTTCCGCGTCG
LOC_Os11g39770
OsAffx.31396.1.S1_at--838--4591Chr11:23204049..23204073 (25 bp)
GCGTTCGAGGTGAGACCCAAGGAAT
LOC_Os11g39770
OsAffx.31396.1.S1_at--94--5312Chr11:23204019..23204043 (25 bp)
GAAGGAACCAGGACGATCGCTGTGT
LOC_Os11g39770
OsAffx.31396.1.S1_at--68--2651Chr11:23204014..23204038 (25 bp)
AACCAGGACGATCGCTGTGTTCGAC
LOC_Os11g39770
OsAffx.31396.1.S1_at--651--8111Chr11:23204009..23204033 (25 bp)
GGACGATCGCTGTGTTCGACAAGGT
LOC_Os11g39770
OsAffx.31396.1.S1_at--966--4031Chr11:23204006..23204030 (25 bp)
CGATCGCTGTGTTCGACAAGGTGAA
LOC_Os11g39770
Target Sequence 
ATGGCCAGCAGGAGGCGTGCCCTAACTCCGACGGCCACCTGGGCAAATCCTGGGCCAAGTTCCGCGTCGAGTACGGCAGC
AACGGCTTCGTCGAGGTGGAGTACGACGTCGACGAGTTCGAGGAGACGCAGCGGCTGCAGGAGGAGCGGAGGCTGTGGCG
GGCACATGTCTGGGAGAAAATCTTCGCCGATGATCCACCGGAGGAAGGCGAGTTCGCCGAGTATGTCAGCGTCTATAATC
AAGAGACGAGGGCGTTCGAGGTGAGACCCAAGGAATTGGAGGAAGGAACCAGGACGATCGCTGTGTTCGACAAGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis