Browse Element(s) Details


OsAffx.31393.1.S1_at

Description tigr:9639.m03627
TID=OsAffx.31393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3974011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39720NANA11+23157166..23159845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39730OsAffx.31392.1.S1_at11/1111+23174255..23177056NB-ARC domain containing protein
LOC_Os11g39740OsAffx.31393.1.S1_at11/1111+23182070..23183273hypothetical protein
LOC_Os11g39750NANA11+23200564..23201127hypothetical protein
LOC_Os11g39760OsAffx.19260.1.S1_at11/1111+23202457..23202879hypothetical protein
LOC_Os11g39770OsAffx.31396.1.S1_at11/1111+23203960..23204597hypothetical protein
LOC_Os11g39780OsAffx.19261.1.S1_at11/1111+23206355..23206933expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31393.1.S1_at--1143--2011Chr11:23182130..23182154 (25 bp)
ACTACGGCACTACCGGAAAGCCATA
LOC_Os11g39740
OsAffx.31393.1.S1_at--352--192Chr11:23182500..23182576 (25 bp)
ATTTCAGTATTTCGGTGAGCCCACG
LOC_Os11g39740
OsAffx.31393.1.S1_at--1017--8911Chr11:23182569..23182591 (23 bp)
TGAGCCCACGGCTAGATTCAGTGAG
LOC_Os11g39740
OsAffx.31393.1.S1_at--1045--9631Chr11:23182584..23182608 (25 bp)
TCAGTGAGACTGGACCCGACGAGAC
LOC_Os11g39740
OsAffx.31393.1.S1_at--983--10851Chr11:23182614..23182638 (25 bp)
TTGGCACTCAGATTGTGGGCGACTT
LOC_Os11g39740
OsAffx.31393.1.S1_at--535--8631Chr11:23182629..23182653 (25 bp)
TGGGCGACTTCGGTGAGACAACTAC
LOC_Os11g39740
OsAffx.31393.1.S1_at--904--2531Chr11:23182648..23183051 (25 bp)
AACTACGGCGGTGGTGACATGGCAA
LOC_Os11g39740
OsAffx.31393.1.S1_at--1077--2411Chr11:23183086..23183110 (25 bp)
AAAACAGCAGCATGGCTCACGGCCT
LOC_Os11g39740
OsAffx.31393.1.S1_at--525--3891Chr11:23183113..23183137 (25 bp)
CTGTGCCTCCAGCAATCGACGTGTG
LOC_Os11g39740
OsAffx.31393.1.S1_at--999--7491Chr11:23183205..23183229 (25 bp)
GTGGTCGCGTGCAGTGAAGTTCTTC
LOC_Os11g39740
OsAffx.31393.1.S1_at--578--8991Chr11:23183219..23183243 (25 bp)
TGAAGTTCTTCGGATGGTGGCAGCT
LOC_Os11g39740
Target Sequence 
ACTACGGCACTACCGGAAAGCCATATGGTGTGCGGCGAGGAATTTCGGATCAAAATTTTGAAATTTCAGTATTTCGGTGA
GCCCACGGCTAGATTCAGTGAGACTGGACCCGACGAGACCAGATTTGGCACTCAGATTGTGGGCGACTTCGGTGAGACAA
CTACGGCGGTGGTGACATGGCAAAATGACCTGAGACAGCAGGGGTCAGTGATGCAAGAAAACAGCAGCATGGCTCACGGC
CTTGCTGTGCCTCCAGCAATCGACGTGTGGGGAGATGGTGGGAGTTTGGGAGCAAGTTGGGCACCGGTGGGAGGTTGGTG
GTGGGGCGCTAGAACGGTGGTCGCGTGCAGTGAAGTTCTTCGGATGGTGGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis