Browse Element(s) Details


OsAffx.31392.1.S1_at

Description tigr:9639.m03626
TID=OsAffx.31392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3973011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39710NANA11+23150100..23151986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39720NANA11+23157166..23159845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39730OsAffx.31392.1.S1_at11/1111+23174255..23177056NB-ARC domain containing protein
LOC_Os11g39740OsAffx.31393.1.S1_at11/1111+23182070..23183273hypothetical protein
LOC_Os11g39750NANA11+23200564..23201127hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31392.1.S1_at--1102--611Chr11:23174824..23174848 (25 bp)
ATGCTAGAAAGCTGTCTGCGCTCGT
LOC_Os11g39730
OsAffx.31392.1.S1_at--504--9491Chr11:23174810..23174834 (25 bp)
TCTGCGCTCGTTGTCAATCAGGATA
LOC_Os11g39730
OsAffx.31392.1.S1_at--351--10771Chr11:23174730..23174754 (25 bp)
TTGATTCACATATGCTGTCACCTCC
LOC_Os11g39730
OsAffx.31392.1.S1_at--110--7491Chr11:23174667..23174691 (25 bp)
GTGGGCTTCCTCGTTGGATGACAGA
LOC_Os11g39730
OsAffx.31392.1.S1_at--424--1451Chr11:23174597..23174621 (25 bp)
AGAAGACGCTCTGCGCATGCTGGGT
LOC_Os11g39730
OsAffx.31392.1.S1_at--594--7151Chr11:23174553..23174577 (25 bp)
GTCTCAGATTCCTGCGAAAAGCGTT
LOC_Os11g39730
OsAffx.31392.1.S1_at--68--5611Chr11:23174519..23174543 (25 bp)
GACAATTATATTCCGTGACAGCGAA
LOC_Os11g39730
OsAffx.31392.1.S1_at--297--1571Chr11:23174461..23174485 (25 bp)
AGCTACCTCAGCACAGTCATATTTG
LOC_Os11g39730
OsAffx.31392.1.S1_at--962--9751Chr11:23174435..23174459 (25 bp)
TAATGGCACAGCTCCTAAGCTCGAG
LOC_Os11g39730
OsAffx.31392.1.S1_at--812--6011Chr11:23174413..23174437 (25 bp)
GAGAGGGTTGCTTTCAAAGTCCCAA
LOC_Os11g39730
OsAffx.31392.1.S1_at--482--2891Chr11:23174390..23174414 (25 bp)
AAGGGTGGCTTCTCTTCATGGAATC
LOC_Os11g39730
Target Sequence 
ATGCTAGAAAGCTGTCTGCGCTCGTTGTCAATCAGGATAATAGAAGGCGCGACAGGGAGTGAGGCCGAGAACAGTGGCAG
TGGGTACAGTTTGATTGATTCACATATGCTGTCACCTCCGAGGTTGCTTCAAACCTTAAACATAAGAGGTGCCAGAGGTG
GGCTTCCTCGTTGGATGACAGAACTCCATCAACTCGCCAAGATCACCCTGCGTGAGACTTACCTAACAGAAGACGCTCTG
CGCATGCTGGGTAGCCTACGTGGCCTGCAGTGTCTCAGATTCCTGCGAAAAGCGTTGACGGAGGGGACAATTATATTCCG
TGACAGCGAATTCAAGAAACTAGTTGATCTTTCATTTGAAGGCAGCTACCTCAGCACAGTCATATTTGATAATGGCACAG
CTCCTAAGCTCGAGAGGGTTGCTTTCAAAGTCCCAAGGGTGGCTTCTCTTCATGGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis