Browse Element(s) Details


OsAffx.31394.1.S1_at

Description tigr:9639.m03633
TID=OsAffx.31394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3980010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39750NANA11+23200564..23201127hypothetical protein
LOC_Os11g39760OsAffx.19260.1.S1_at11/1111+23202457..23202879hypothetical protein
LOC_Os11g39770OsAffx.31396.1.S1_at11/1111+23203960..23204597hypothetical protein
LOC_Os11g39780OsAffx.19261.1.S1_at11/1111+23206355..23206933expressed protein
LOC_Os11g39790OsAffx.22848.3.S1_x_at1/1111+23212631..23218755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39800OsAffx.31394.1.S1_at10/1111+23223871..23224786hypothetical protein
LOC_Os11g39810OsAffx.7361.1.S1_at11/1111+23230037..23233495hypothetical protein
LOC_Os11g39820NANA11+23243054..23244635hypothetical protein
LOC_Os11g39830OsAffx.31396.2.S1_at11/1111+23246837..23247379hypothetical protein
LOC_Os11g39840OsAffx.19262.1.S1_at11/1111+23249193..23249684hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31394.1.S1_at--1030--891NONE
AGGCGGTTGAAGATCACGATGAGAT
NONE
OsAffx.31394.1.S1_at--469--5351Chr11:23224095..23224117 (23 bp)
GAAGATCACGATGAGATATTCCTGA
LOC_Os11g39800
OsAffx.31394.1.S1_at--418--231Chr11:23224080..23224104 (25 bp)
ATATTCCTGATGCATTCTTCTGACC
LOC_Os11g39800
OsAffx.31394.1.S1_at--518--111Chr11:23224067..23224091 (25 bp)
ATTCTTCTGACCTCACCTGCGAGCG
LOC_Os11g39800
OsAffx.31394.1.S1_at--1076--9131Chr11:23224050..23224074 (25 bp)
TGCGAGCGCTGCGATCAGCTCATGG
LOC_Os11g39800
OsAffx.31394.1.S1_at--92--1591Chr11:23224034..23224058 (25 bp)
AGCTCATGGCTGTGTCGAGATCCTG
LOC_Os11g39800
OsAffx.31394.1.S1_at--204--8671Chr11:23224024..23224048 (25 bp)
TGTGTCGAGATCCTGCCGCAGTGCT
LOC_Os11g39800
OsAffx.31394.1.S1_at--304--3831Chr11:23224012..23224036 (25 bp)
CTGCCGCAGTGCTCACGCCGGTGTG
LOC_Os11g39800
OsAffx.31394.1.S1_at--87--7471Chr11:23223971..23223995 (25 bp)
GTGTGCGCACGCATCCGCCGGAGAC
LOC_Os11g39800
OsAffx.31394.1.S1_at--774--1271Chr11:23223950..23223974 (25 bp)
AGACGAGGGCTCCTAACCAGGAGAC
LOC_Os11g39800
OsAffx.31394.1.S1_at--704--9251Chr11:23223940..23223964 (25 bp)
TCCTAACCAGGAGACGCACGATGCG
LOC_Os11g39800
Target Sequence 
AGGCGGTTGAAGATCACGATGAGATATTCCTGATGCATTCTTCTGACCTCACCTGCGAGCGCTGCGATCAGCTCATGGCT
GTGTCGAGATCCTGCCGCAGTGCTCACGCCGGTGTGGCGGTGGCTGCTCCTCGTGTGCGCACGCATCCGCCGGAGACGAG
GGCTCCTAACCAGGAGACGCACGATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis