Browse Element(s) Details


OsAffx.31396.2.S1_at

Description tigr:9639.m03636
TID=OsAffx.31396.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39800OsAffx.31394.1.S1_at10/1111+23223871..23224786hypothetical protein
LOC_Os11g39810OsAffx.7361.1.S1_at11/1111+23230037..23233495hypothetical protein
LOC_Os11g39820NANA11+23243054..23244635hypothetical protein
LOC_Os11g39830OsAffx.31396.2.S1_at11/1111+23246837..23247379hypothetical protein
LOC_Os11g39840OsAffx.19262.1.S1_at11/1111+23249193..23249684hypothetical protein
LOC_Os11g39850OsAffx.31397.1.S1_at11/1111+23252534..23254948expressed protein
LOC_Os11g39860NANA11+23258744..23259502retrotransposon protein, putative, unclassified
LOC_Os11g39870Os.46314.2.S1_x_at2/1111+23262725..23268858retrotransposon protein, putative, unclassified
LOC_Os11g39880NANA11+23271211..23273188retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31396.2.S1_at--980--3931Chr11:23247325..23247349 (25 bp)
CGGCTGTCGCAAGACAACATCGAGT
LOC_Os11g39830
OsAffx.31396.2.S1_at--279--2511Chr11:23247310..23247334 (25 bp)
AACATCGAGTGGATCCTCGCCCGAA
LOC_Os11g39830
OsAffx.31396.2.S1_at--1050--1851Chr11:23247270..23247294 (25 bp)
ACGACGCCCCGGACATCGAGAGGTA
LOC_Os11g39830
OsAffx.31396.2.S1_at--792--3951Chr11:23247261..23247285 (25 bp)
CGGACATCGAGAGGTACATCCCCTT
LOC_Os11g39830
OsAffx.31396.2.S1_at--963--1931Chr11:23247156..23247180 (25 bp)
ACGGCATCCTGAAGGCCACCTGGGC
LOC_Os11g39830
OsAffx.31396.2.S1_at--835--4351Chr11:23247141..23247165 (25 bp)
CCACCTGGGCCAAGTTCAGGGACTT
LOC_Os11g39830
OsAffx.31396.2.S1_at--263--9231Chr11:23247117..23247141 (25 bp)
TCCAGAGCTGGGTCCGCGTCGAGTA
LOC_Os11g39830
OsAffx.31396.2.S1_at--626--551Chr11:23246973..23246997 (25 bp)
ATCCGCCGGTGGAAGGCGAGTTCAC
LOC_Os11g39830
OsAffx.31396.2.S1_at--1039--1851Chr11:23246920..23246944 (25 bp)
ACGAGGGCATTCGTGATGAGACCGA
LOC_Os11g39830
OsAffx.31396.2.S1_at--488--8011Chr11:23246888..23246912 (25 bp)
GGAGGTAGGTACAAGAACGATTGCT
LOC_Os11g39830
OsAffx.31396.2.S1_at--115--2591Chr11:23246873..23246897 (25 bp)
AACGATTGCTGTTTTCGACAAGGTC
LOC_Os11g39830
Target Sequence 
CGGCTGTCGCAAGACAACATCGAGTGGATCCTCGCCCGAACGGAGCTCTGCACCGACGACGCCCCGGACATCGAGAGGTA
CATCCCCTTCGTCCCCGACGCCGACGTCGACGAGGACCACCTCCCGGAGATCTACTACGACGAGCCGGAGGCGCTGCTGG
TGCACATCAACGGCATCCTGAAGGCCACCTGGGCCAAGTTCAGGGACTTCCAGAGCTGGGTCCGCGTCGAGTACGGCAGC
AATGGCTTCGTCGAGGTGGAGTACGACGTCGACGAGTTCGAGGAGGCGCAGCGGCTGCAGGAGGAGCGGAGGCTGTGGCG
TGCGCATGTCTGGGAGAAAATCTTCGCCGATGATCCGCCGGTGGAAGGCGAGTTCACCGAGTATGTCAGCGTATATGATC
AAGAGACGAGGGCATTCGTGATGAGACCGAAGGAATTGGAGGTAGGTACAAGAACGATTGCTGTTTTCGACAAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31396.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis