Browse Element(s) Details


OsAffx.31397.1.S1_at

Description tigr:9639.m03638
TID=OsAffx.31397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3985011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39810OsAffx.7361.1.S1_at11/1111+23230037..23233495hypothetical protein
LOC_Os11g39820NANA11+23243054..23244635hypothetical protein
LOC_Os11g39830OsAffx.31396.2.S1_at11/1111+23246837..23247379hypothetical protein
LOC_Os11g39840OsAffx.19262.1.S1_at11/1111+23249193..23249684hypothetical protein
LOC_Os11g39850OsAffx.31397.1.S1_at11/1111+23252534..23254948expressed protein
LOC_Os11g39860NANA11+23258744..23259502retrotransposon protein, putative, unclassified
LOC_Os11g39870Os.46314.2.S1_x_at2/1111+23262725..23268858retrotransposon protein, putative, unclassified
LOC_Os11g39880NANA11+23271211..23273188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39890NANA11+23274522..23275732retrotransposon protein, putative, unclassified
LOC_Os11g39900NANA11+23276356..23279647retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31397.1.S1_at--956--7831Chr11:23253074..23253098 (25 bp)
GGTACTGCCAATTGCTCGATCTATA
LOC_Os11g39850
OsAffx.31397.1.S1_at--192--8071Chr11:23253032..23253056 (25 bp)
GGAGCTTTCCAGTCCAATCAGAAGA
LOC_Os11g39850
OsAffx.31397.1.S1_at--778--5671Chr11:23252867..23252891 (25 bp)
GACATCTTGGACAACTGCTTACTGA
LOC_Os11g39850
OsAffx.31397.1.S1_at--919--1291Chr11:23252824..23252848 (25 bp)
AGATGCGATCACTTCGTGCGATGAT
LOC_Os11g39850
OsAffx.31397.1.S1_at--506--7331Chr11:23252727..23252751 (25 bp)
GTGCTTGGTGGTACTGCATTTGCAT
LOC_Os11g39850
OsAffx.31397.1.S1_at--675--4951Chr11:23252712..23252736 (25 bp)
GCATTTGCATTCTTCTGAGCCTAGA
LOC_Os11g39850
OsAffx.31397.1.S1_at--631--10371Chr11:23252679..23252703 (25 bp)
TTTTAGTGGTACAGCATTTGCCGCC
LOC_Os11g39850
OsAffx.31397.1.S1_at--247--211Chr11:23252664..23252688 (25 bp)
ATTTGCCGCCTTCTGTCTAGAGAGC
LOC_Os11g39850
OsAffx.31397.1.S1_at--1107--10031Chr11:23252638..23252662 (25 bp)
TAGAGGTGCTTCTGTTAGTGCTACA
LOC_Os11g39850
OsAffx.31397.1.S1_at--44--1551Chr11:23252614..23252638 (25 bp)
AGCATTTGCGTTCTTCTGTCCGAAA
LOC_Os11g39850
OsAffx.31397.1.S1_at--275--10811Chr11:23252576..23252600 (25 bp)
TTGTACTCCTTGCAGATTGACTCTC
LOC_Os11g39850
Target Sequence 
GGTACTGCCAATTGCTCGATCTATAAAGAACCAGTTGAAGTTGGAGCTTTCCAGTCCAATCAGAAGATTTATGAGCCAGA
CAAGAGATTTATGACGGGAAATGAAGTCACTGACAGCGAATACATTGAGCTAGTCGGGCTTTACAATAAAATGAACAATC
TCCAATTAGAGACCAAGGACATGATCAAGGGGAATGCTATGAGGAGTGACATCTTGGACAACTGCTTACTGATGAGGAAC
TTAGTTCGGAAGATGCGATCACTTCGTGCGATGATCAAAAGAAAAGTCGAAGGTGAACCTCCTATAATACCTCCCAATCT
ATTAGAAATTCCAGATATCTCTTAGTGGTGCTTGGTGGTACTGCATTTGCATTCTTCTGAGCCTAGAAGTGCTTCTTTTA
GTGGTACAGCATTTGCCGCCTTCTGTCTAGAGAGCCTAGAGGTGCTTCTGTTAGTGCTACAGCATTTGCGTTCTTCTGTC
CGAAAGTGGGCAGTAAATTTGTACTCCTTGCAGATTGACTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis