Browse Element(s) Details


OsAffx.7361.1.S1_at

Description tigr:9639.m03634
TID=OsAffx.7361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3981011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39780OsAffx.19261.1.S1_at11/1111+23206355..23206933expressed protein
LOC_Os11g39790OsAffx.22848.3.S1_x_at1/1111+23212631..23218755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39800OsAffx.31394.1.S1_at10/1111+23223871..23224786hypothetical protein
LOC_Os11g39810OsAffx.7361.1.S1_at11/1111+23230037..23233495hypothetical protein
LOC_Os11g39820NANA11+23243054..23244635hypothetical protein
LOC_Os11g39830OsAffx.31396.2.S1_at11/1111+23246837..23247379hypothetical protein
LOC_Os11g39840OsAffx.19262.1.S1_at11/1111+23249193..23249684hypothetical protein
LOC_Os11g39850OsAffx.31397.1.S1_at11/1111+23252534..23254948expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7361.1.S1_at--125--1911Chr11:23231073..23231097 (25 bp)
ACGTCGAGCACGTCGTTGTACTGGA
LOC_Os11g39810
OsAffx.7361.1.S1_at--345--10793Chr11:23231088..23231112 (25 bp)
TTGTACTGGACCACGAGCCGGTGGA
LOC_Os11g39810
OsAffx.7361.1.S1_at--819--9911Chr11:23231116..23231140 (25 bp)
TACTGCGGGCTTGGTTCTCGGTGCT
LOC_Os11g39810
OsAffx.7361.1.S1_at--1017--10031Chr11:23231172..23231196 (25 bp)
TAGAGGCTCGCGCTCTCAAGAACAT
LOC_Os11g39810
OsAffx.7361.1.S1_at--96--811Chr11:23232662..23232686 (25 bp)
ATGGTTGCAATTCCAATTCACCCTC
LOC_Os11g39810
OsAffx.7361.1.S1_at--725--9671Chr11:23232679..23232703 (25 bp)
TCACCCTCGCCTTCTGAGAAAAGAA
LOC_Os11g39810
OsAffx.7361.1.S1_at--151--211Chr11:23232854..23232878 (25 bp)
ATTTGATGTAGAGGCCTCCTACCTT
LOC_Os11g39810
OsAffx.7361.1.S1_at--120--8411Chr11:23232866..23232890 (25 bp)
GGCCTCCTACCTTACTGGGAATGAA
LOC_Os11g39810
OsAffx.7361.1.S1_at--85--8851Chr11:23232937..23232961 (25 bp)
TGATCTCTCTGATGGAAGCCGTTGA
LOC_Os11g39810
OsAffx.7361.1.S1_at--346--2671Chr11:23232952..23232976 (25 bp)
AAGCCGTTGAACATGGTCTGTCACT
LOC_Os11g39810
OsAffx.7361.1.S1_at--584--6511Chr11:23232981..23233005 (25 bp)
GATTCTAAGGACCTCGAACGTGAAA
LOC_Os11g39810
Target Sequence 
ACGTCGAGCACGTCGTTGTACTGGACCACGAGCCGGTGGAGGCTACTGCGGGCTTGGTTCTCGGTGCTCCCGTTCCGGCG
GCTGTACGCGCGGCCGTGTTAGAGGCTCGCGCTCTCAAGAACATGGAGGGTGCCAAAGCGGCTAAAGAAGCAAGAAAACT
TTGGGAGCGCGGGAACTTAAATGGTAGCAACAATGGTTGCAATTCCAATTCACCCTCGCCTTCTGAGAAAAGAAGGTTTG
CTGACCCTAAAGAAAAGATTTTTCAGAAATTTGATGTAGAGGCCTCCTACCTTACTGGGAATGAAGACAGTGATAGCAAG
TACAGACGTTTGGTTGATTTATTCAACCAAATGATCTCTCTGATGGAAGCCGTTGAACATGGTCTGTCACTTGAAGATTC
TAAGGACCTCGAACGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis