Browse Element(s) Details


Os.46609.1.S1_x_at

Description gb:NM_187542.1
DB_XREF= gi:34902169
GEN=OSJNBa0090O10.12
TID=Os.46609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46609 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative Ste20-related protein kinase (OSJNBa0090O10.12), mRNA.
PROD=Putative Ste20-related protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0232010/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02330Os.30518.1.S1_at11/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02330Os.2528.1.S1_x_at1/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02340NANA3+797203..799457hypothetical protein
LOC_Os03g02350NANA3+800595..806750transposon protein, putative, unclassified
LOC_Os03g02360Os.31312.5.S1_x_at6/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02360Os.31312.2.S1_x_at4/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02370Os.41695.15.S1_s_at9/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.5.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.2.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.3.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.4.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46609.1.S1_x_at--539--2191Chr03:784150..784174 (25 bp)
ACAAATCTCAGTGGTCCTCTTGCAC
LOC_Os03g02320
Os.46609.1.S1_x_at--608--9311Chr03:784175..784199 (25 bp)
TCCCTACTCGTGCTTCTGCAAATAG
LOC_Os03g02320
Os.46609.1.S1_x_at--829--1471Chr03:784194..784218 (25 bp)
AAATAGTCTGTCTGCTCCTATTCGG
LOC_Os03g02320
Os.46609.1.S1_x_at--651--3691Chr03:784211..784418 (25 bp)
CTATTCGGTCTTCTGGAGGCTATGT
LOC_Os03g02320
Os.46609.1.S1_x_at--388--2431Chr03:784461..784485 (25 bp)
AAAAGGACGTTTTTCAGTGACATCT
LOC_Os03g02320
Os.46609.1.S1_x_at--722--8191Chr03:784605..784629 (25 bp)
GGAAGTTCCAACAAGCGGCATTTCA
LOC_Os03g02320
Os.46609.1.S1_x_at--936--5511Chr03:784768..784792 (25 bp)
GAAAATCAGCCAGCGTTGGTCATTG
LOC_Os03g02320
Os.46609.1.S1_x_at--919--9791NONE
TAAGCCAATGGATCTCATCACAAAC
NONE
Os.46609.1.S1_x_at--615--2371Chr03:785559..785583 (25 bp)
AAACCTCCTAAGTAGCTTGCAACAG
LOC_Os03g02320
Os.46609.1.S1_x_at--586--6151Chr03:785855..785878 (24 bp)
GAGGTTGAAACGTCTATTTCCGAGG
LOC_Os03g02320
Os.46609.1.S1_x_at--1009--7631Chr03:785877..785901 (25 bp)
GGGAGAACGGTCATTACTTGTCAAA
LOC_Os03g02320
Target Sequence 
ACAAATCTCAGTGGTCCTCTTGCACTCCCTACTCGTGCTTCTGCAAATAGTCTGTCTGCTCCTATTCGGTCTTCTGGAGG
CTATGTGGGCTCCTTGGGAGATAAGTCTAAGCGTAGTGTGGTGGAGATAAAAGGACGTTTTTCAGTGACATCTGAGAATG
TGGATCTTGCAAAGGTTCAGGAAGTTCCAACAAGCGGCATTTCACGCAAATTACAGGAGGGATCTTCACTGAGAAAATCA
GCCAGCGTTGGTCATTGGCCGGTGGATGCTAAGCCAATGGATCTCATCACAAACCTCCTAAGTAGCTTGCAACAGAATGA
GAAAGCTGACGCAACACAGTATAGACTTGGTAATATGGATGGTGATACAGAGGTTGAAACGTCTATTTCCGAGGGAGAAC
GGTCATTACTTGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46609.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis