Browse Element(s) Details


Os.30518.1.S1_at

Description gb:AK108730.1
DB_XREF= gi:32993939
TID=Os.30518.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D02, full insert sequence.
FL= gb:AK108730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0233011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02330Os.30518.1.S1_at11/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02330Os.2528.1.S1_x_at1/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02340NANA3+797203..799457hypothetical protein
LOC_Os03g02350NANA3+800595..806750transposon protein, putative, unclassified
LOC_Os03g02360Os.31312.5.S1_x_at6/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02360Os.31312.2.S1_x_at4/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02370Os.41695.15.S1_s_at9/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.5.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.2.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.3.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.4.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30518.1.S1_at--747--5151Chr03:791741..791765 (25 bp)
GCAACGTCATCACGAAGCTCCAGCA
LOC_Os03g02330
Os.30518.1.S1_at--308--9691Chr03:791732..791756 (25 bp)
TCACGAAGCTCCAGCACGTGTCCGG
LOC_Os03g02330
Os.30518.1.S1_at--1072--4111Chr03:791684..791708 (25 bp)
CGCACAGGCGGAACACGAGCTGGTC
LOC_Os03g02330
Os.30518.1.S1_at--999--7571Chr03:791488..791512 (25 bp)
GGGCTCCAGCGGGTTCATGCCCTTG
LOC_Os03g02330
Os.30518.1.S1_at--1152--6711Chr03:791476..791500 (25 bp)
GTTCATGCCCTTGCACGGCGGCGAA
LOC_Os03g02330
Os.30518.1.S1_at--833--4071Chr03:791422..791446 (25 bp)
CGAGCACGACAAGGAGCGGTGATTA
LOC_Os03g02330
Os.30518.1.S1_at--855--1611Chr03:791408..791432 (25 bp)
AGCGGTGATTAATTAGGCGATGGTA
LOC_Os03g02330
Os.30518.1.S1_at--818--8371Chr03:791393..791417 (25 bp)
GGCGATGGTAGTAGACCCCGTCAAA
LOC_Os03g02330
Os.30518.1.S1_at--65--10251Chr03:791347..791371 (25 bp)
TTTGTCCGTGCTTTTTTACTTCGTG
LOC_Os03g02330
Os.30518.1.S1_at--885--7291Chr03:791340..791364 (25 bp)
GTGCTTTTTTACTTCGTGTTAGGCT
LOC_Os03g02330
Os.30518.1.S1_at--887--3611Chr03:791329..791353 (25 bp)
CTTCGTGTTAGGCTAGTAGGAGTAC
LOC_Os03g02330
Target Sequence 
GCAACGTCATCACGAAGCTCCAGCACGTGTCCGGGGCGGCGGCGGCGCCGCGGCCGCCGCACAGGCGGAACACGAGCTGG
TCCGGCGCGGGCNGGGCCATGGGAGGAGCAGGCCGCGCGCGCNAGCGCGGACGCNGGCGGACGGCGGCGAGGAGGCGATC
ACGGCGACGGCGGCGTGCGGGGTGTTCGCGAAGGACGCGCCGATGAGGGAGTTCAAGAAGCTGTACGGGCTGATCAAGAT
CAGGAGCCGGAAGGAGGGCTCCAGCGGGTTCATGCCCTTGCACGGCGGCGAAGCGCCGTCGCCGGCAAACGGGCGGGGCA
GCGAGCACGACAAGGAGCGGTGATTAATTAGGCGATGGTAGTAGACCCCGTCAAACAAGAAAAATATTTTTGATTTTTTG
TCCGTGCTTTTTTACTTCGTGTTAGGCTAGTAGGAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis