Browse Element(s) Details


Os.51682.1.S1_at

Description gb:AK063381.1
DB_XREF= gi:32973399
TID=Os.51682.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G02, full insert sequence.
FL= gb:AK063381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0229011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02330Os.30518.1.S1_at11/113+791171..793070ATPase, AAA family protein, expressed
LOC_Os03g02330Os.2528.1.S1_x_at1/113+791171..793070ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51682.1.S1_at--57--7831Chr03:769723..769747 (25 bp)
GGTCAGGTAGGCAGCTGCTTCTGAA
LOC_Os03g02290
Os.51682.1.S1_at--105--9072Chr04:31258592..31259049 (25 bp)
TGCTTCTGAACCTGACATTGCCATT
NONE
Os.51682.1.S1_at--793--8951Chr03:769750..769774 (25 bp)
TGACATTGCCATTGCACCCAATATG
LOC_Os03g02290
Os.51682.1.S1_at--894--3351Chr03:769764..769788 (25 bp)
CACCCAATATGGCTTGTAGTATGGT
LOC_Os03g02290
Os.51682.1.S1_at--536--10071Chr03:769783..769807 (25 bp)
TATGGTAGAGGCTCAAACTTTTAGC
LOC_Os03g02290
Os.51682.1.S1_at--303--2391Chr03:769797..769821 (25 bp)
AAACTTTTAGCTGAGTCGCGCTGCG
LOC_Os03g02290
Os.51682.1.S1_at--1070--9131Chr03:769818..769842 (25 bp)
TGCGTCCTTCGCAGTGGATAGTAGA
LOC_Os03g02290
Os.51682.1.S1_at--1122--4111Chr03:769827..769851 (25 bp)
CGCAGTGGATAGTAGAGCACGCATT
LOC_Os03g02290
Os.51682.1.S1_at--57--3611Chr03:769848..769872 (25 bp)
CATTGTAACGTGGAGTGCTGCGCTC
LOC_Os03g02290
Os.51682.1.S1_at--407--3831Chr03:769865..769889 (25 bp)
CTGCGCTCCTGTGTAATCTATTATT
LOC_Os03g02290
Os.51682.1.S1_at--481--8951Chr03:769889..769913 (25 bp)
TGACTACTATACTATCTTGCAGATT
LOC_Os03g02290
Target Sequence 
GGTCAGGTAGGCAGCTGCTTCTGAACCTGACATTGCCATTGCACCCAATATGGCTTGTAGTATGGTAGAGGCTCAAACTT
TTAGCTGAGTCGCGCTGCGTCCTTCGCAGTGGATAGTAGAGCACGCATTGTAACGTGGAGTGCTGCGCTCCTGTGTAATC
TATTATTGACTACTATACTATCTTGCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis