Browse Element(s) Details


Os.50021.1.S1_at

Description gb:AK107900.1
DB_XREF= gi:32993109
TID=Os.50021.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F07, full insert sequence.
FL= gb:AK119700.1 gb:AK107900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0228010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein
LOC_Os03g02280Os.50021.1.S1_at10/113+759421..760197expressed protein
LOC_Os03g02290OsAffx.12711.1.S1_x_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02290Os.51682.1.S1_at11/113+766553..769938kinesin motor protein, putative, expressed
LOC_Os03g02300Os.55532.1.S1_at1/113+771994..772674expressed protein
LOC_Os03g02310Os.5131.1.S1_at11/113+773712..776444LOC496359 protein, putative, expressed
LOC_Os03g02320Os.17312.2.S1_x_at11/113+778378..787641protein kinase, putative, expressed
LOC_Os03g02320Os.46609.1.S1_x_at10/113+778378..787641protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50021.1.S1_at--445--1351Chr03:759636..759660 (25 bp)
AGAGCGACGTGGTGTGGCCGGCCGG
LOC_Os03g02280
Os.50021.1.S1_at--591--5771Chr03:759671..759695 (25 bp)
GACGACGGTTACTGCTGCCCGGCGC
LOC_Os03g02280
Os.50021.1.S1_at--289--831Chr03:759819..759843 (25 bp)
ATGGAGTGGCCGTGCCCGTGAGGGC
LOC_Os03g02280
Os.50021.1.S1_at--160--7171Chr03:759883..759907 (25 bp)
GTCGGCACCGGTGAGGGTCCCGATG
LOC_Os03g02280
Os.50021.1.S1_at--467--1371Chr03:760101..760125 (25 bp)
AGACCGGATTCCTCGACCTCTGAAG
LOC_Os03g02280
Os.50021.1.S1_at--157--91Chr03:760108..760132 (25 bp)
ATTCCTCGACCTCTGAAGAATCCAA
LOC_Os03g02280
Os.50021.1.S1_at--826--8991Chr03:760121..760145 (25 bp)
TGAAGAATCCAAAGCATCCCATCGC
LOC_Os03g02280
Os.50021.1.S1_at--690--4331Chr03:760139..760163 (25 bp)
CCATCGCCATCATCATATCTTGATT
LOC_Os03g02280
Os.50021.1.S1_at--1030--3571Chr03:760152..760176 (25 bp)
CATATCTTGATTAGCCATTTCTCAT
LOC_Os03g02280
Os.50021.1.S1_at--866--191Chr03:760168..760192 (25 bp)
ATTTCTCATCATCAGTTTTCCGGTG
LOC_Os03g02280
Os.50021.1.S1_at--225--431Chr03:760175..760199 (25 bp)
ATCATCAGTTTTCCGGTGTGACTAA
NONE
Target Sequence 
AGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCA
CCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGG
CGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCAC
CGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAG
TCCGACGACAACGAGGACGACGAGATGGNGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCT
GGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCG
ACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTCCGGTGTGA
CTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis