Browse Element(s) Details


Os.56285.1.S1_at

Description gb:AK109767.1
DB_XREF= gi:32994976
TID=Os.56285.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-H12, full insert sequence.
FL= gb:AK109767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0221011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56285.1.S1_at--202--51Chr03:719841..719865 (25 bp)
ATTGTCTTTCACCATTACCAGCAAG
LOC_Os03g02210
Os.56285.1.S1_at--836--3191Chr03:719862..719886 (25 bp)
CAAGGTTATCTTGCTCAATACCACC
LOC_Os03g02210
Os.56285.1.S1_at--965--5211Chr03:719931..719955 (25 bp)
GAATATGCTATACCAAGCCCTACTT
LOC_Os03g02210
Os.56285.1.S1_at--734--4531Chr03:719947..719971 (25 bp)
GCCCTACTTGCATCATTTACCATAT
LOC_Os03g02210
Os.56285.1.S1_at--180--9531Chr03:719971..719995 (25 bp)
TCTACACATGTTGCTTTCGTGAACA
LOC_Os03g02210
Os.56285.1.S1_at--48--1591Chr03:721191..721215 (25 bp)
AGCTCTATCCATCTTGTTATCCTTG
LOC_Os03g02210
Os.56285.1.S1_at--633--10431Chr03:721207..721231 (25 bp)
TTATCCTTGCTCTGTCGCTATGACA
LOC_Os03g02210
Os.56285.1.S1_at--423--2131Chr03:721229..721253 (25 bp)
ACAGAGATGCTTTCCTGCACTTTTA
LOC_Os03g02210
Os.56285.1.S1_at--907--9551Chr03:721322..721346 (25 bp)
TCTTTTGAAACCTAGCCAGCACAGC
LOC_Os03g02210
Os.56285.1.S1_at--1161--1351Chr03:721401..721425 (25 bp)
AGAGAAGCACTCTACAGCCTGGATG
LOC_Os03g02210
Os.56285.1.S1_at--269--3091Chr03:721472..721496 (25 bp)
AATTAAGTCCAGAGTTTCATCCCCT
LOC_Os03g02210
Target Sequence 
ATTGTCTTTCACCATTACCAGCAAGGTTATCTTGCTCAATACCACCTCCGCAGCGGCACATTGGAGCCAGCATCAGATGG
AACGATTGCAGAATATGCTATACCAAGCCCTACTTGCATCATTTACCATATCTACACATGTTGCTTTCGTGAACAATGGA
ACAAGGGACATATAAGGTTTCAGGGGTTATTAACGATTAACTGGCGGGTGAAGCGAAAATGGAGATCTGGGGCGTAAACG
GGTCATGTACCATGGTGGAGTACGTAGGTGGTGCCTGGTTTTCCTTCCTCTACAGCTCTATCCATCTTGTTATCCTTGCT
CTGTCGCTATGACAGAGATGCTTTCCTGCACTTTTAAATTATTACTCCTATGTACTCCAGGAGTATGTTTGTTAGGCAAC
CTTTTCATGTTCGAACAACATTGTTCTTTTGAAACCTAGCCAGCACAGCTGGTGCTGTATTAAGGACACATATGTACAAT
GTGTCGTCAGTTTAGAACAGGAAAGAGAAGCACTCTACAGCCTGGATGCTATTTAAGGGGATATGTATGCTTGCTAAAGA
TTTTGCACCACGCAAATTAAGTCCAGAGTTTCATCCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis