Browse Element(s) Details


Os.53878.1.S1_at

Description gb:AK100572.1
DB_XREF= gi:32985781
TID=Os.53878.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105E01, full insert sequence.
FL= gb:AK100572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0217011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02140Os.38395.4.S1_x_at6/113+671415..675170transposon protein, putative, Mutator sub-class
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53878.1.S1_at--98--5711Chr03:700436..700460 (25 bp)
GACTCTCATTGGGTTTTCACTAGGT
LOC_Os03g02170
Os.53878.1.S1_at--550--9591Chr03:700237..700261 (25 bp)
TCTTGGTGCTCCAGTTTCTGTGAAA
LOC_Os03g02170
Os.53878.1.S1_at--1037--5731Chr03:700005..700029 (25 bp)
GACTGGATTCTTGGTGTTACTTTTC
LOC_Os03g02170
Os.53878.1.S1_at--559--6771Chr03:699901..700014 (25 bp)
GTTACTTTTCGTGCGAGTCTGCTAA
LOC_Os03g02170
Os.53878.1.S1_at--337--2471Chr03:699878..699902 (25 bp)
AACACAAGGGTTGGCTGGCATCCAG
LOC_Os03g02170
Os.53878.1.S1_at--963--8431Chr03:699854..699878 (25 bp)
GGCCATTGATGTCCCTGGTGTTGAA
LOC_Os03g02170
Os.53878.1.S1_at--1159--2271Chr03:699746..699766 (21 bp)
AAATGTCGATGTTACGGAGCTTGTC
LOC_Os03g02170
Os.53878.1.S1_at--124--5931Chr03:699730..699754 (25 bp)
GAGCTTGTCGATGGCCATTCGTCTT
LOC_Os03g02170
Os.53878.1.S1_at--1076--10611Chr03:699713..699737 (25 bp)
TTCGTCTTACCTGTCGGCAGCACAA
LOC_Os03g02170
Os.53878.1.S1_at--740--9931Chr03:699655..699679 (25 bp)
TATCCGGTTTTTGTTCCCCTGAGCG
LOC_Os03g02170
Os.53878.1.S1_at--973--1951Chr03:699501..699525 (25 bp)
ACTGTAAACCAGTCTCAGCCTGAGG
LOC_Os03g02170
Target Sequence 
GACTCTCATTGGGTTTTCACTAGGTGCACGTGTTATATTTAAGTGTTTACAGGAACTTGCTTTATCGAGTGATAATGAGG
GACTTGTTGAGAGGGTGGTTCTTCTTGGTGCTCCAGTTTCTGTGAAAGGCGAGCGGTGGGAGGCTGCAAGGAAGATGGTT
GCTGGAAGATTTGTGAATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGTCTGCTAACACAAGG
GTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATGTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTT
ACCTGTCGGCAGCACAACAGATACTGGAGCATCTTGAACTAAATACCTACTATCCGGTTTTTGTTCCCCTGAGCGCAGCC
AACGAAGAAACAGATGGAACAGTTGCACAGTAACGTGTGGGCAGGATTCGATGAAAATCGTATGTAGACAACCAAATGTA
ACAGACTATATATACAACCAAATGTAACAGACTAACTCGTTCAAACTGTAAACCAGTCTCAGCCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis