Browse Element(s) Details


Os.2298.1.S1_at

Description gb:AF066050.1
DB_XREF= gi:3411151
GEN=TK
TID=Os.2298.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2298 (NCBI UniGene Cluster)
DEF=Oryza sativa thymidine kinase (TK) mRNA, complete cds.
PROD=thymidine kinase
FL= gb:AK066124.1 gb:AF066050.1 gb:AK068779.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0220011/11Thymidine kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004797molecular_functionthymidine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2298.1.S1_at--840--5111Chr03:717195..717219 (25 bp)
GCACAGTTTTTTGACGATCTTCATG
LOC_Os03g02200
Os.2298.1.S1_at--242--9331Chr03:717265..717289 (25 bp)
TCGCAGGGCTAGATGGTGACTACAA
LOC_Os03g02200
Os.2298.1.S1_at--738--10611Chr03:717677..717701 (25 bp)
TTCTGGACATTATACCCTTGGCTGA
LOC_Os03g02200
Os.2298.1.S1_at--1000--4491Chr03:717743..717767 (25 bp)
GCCGTGCATTCTTCACGCTGAGGAA
LOC_Os03g02200
Os.2298.1.S1_at--526--2531Chr03:717777..717801 (25 bp)
AACTAAGACCGAGCTCATTGGAGGA
LOC_Os03g02200
Os.2298.1.S1_at--274--8091Chr03:717799..717823 (25 bp)
GGAGCTGATGTGTACATGCCTGTAT
LOC_Os03g02200
Os.2298.1.S1_at--439--931Chr03:717826..717850 (25 bp)
AGGCAACACTACCTGGATGGTCAGA
LOC_Os03g02200
Os.2298.1.S1_at--964--2891Chr03:717895..717919 (25 bp)
AAGGTTATCCATGCTTTCAAGTGAG
LOC_Os03g02200
Os.2298.1.S1_at--698--7351Chr03:717919..717943 (25 bp)
GTGAATAGCTCATTGTATCCTTTTT
LOC_Os03g02200
Os.2298.1.S1_at--901--10471Chr03:717942..717966 (25 bp)
TTACTTGCAAGGCTTACCATGTGTA
LOC_Os03g02200
Os.2298.1.S1_at--1047--5971Chr03:718036..718060 (25 bp)
GAGACTCTCCATTAAACGATTGTAA
LOC_Os03g02200
Target Sequence 
GCACAGTTTTTTGACGATCTTCATGANTTCTGCTGCAAAGCTGCTGACCGTGATGGAAAAATTGTTGTAGTCGCAGGGCT
AGATGGTGACTACAAAAGGAACAAATTTGGGTCAGTTCTGGACATTATACCCTTGGCTGACTCGGTCACCAAGCTCACCG
CACGCTGTGAGTTGTGCGGTCGCCGTGCATTCTTCACGCTGAGGAAGACACGGGAAACTAAGACCGAGCTCATTGGAGGA
GCTGATGTGTACATGCCTGTATGTAGGCAACACTACCTGGATGGTCAGATTGTCATTGAGGCCACAAGGATTGTGCTGGA
TCTTGAAAAATCCAAGGTTATCCATGCTTTCAAGTGAGTGAATAGCTCATTGTATCCTTTTTACTTGCAAGGCTTACCAT
GTGTAACACTATCATCATCAACCATGCAATCCATCTAGTTATCGTAGAAGATGATGGAAAGACCACAATATTCAGAGACT
CTCCATTAAACGATTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis