Browse Element(s) Details


Os.9132.1.A1_at

Description gb:CB618243
DB_XREF= gi:29613230
DB_XREF=OSIIEa02A05.r
CLONE=OSIIEa02A05
TID=Os.9132.1
CNT=694
FEA=FLmRNA
TIER=Stack
STK=684
UG=Os.9132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013063J08, full insert sequence
FL= gb:AK066407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0452011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04490Os.47965.1.A1_at11/113+2067784..2070814Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9132.1.A1_at--1108--2591Chr03:2082937..2082961 (25 bp)
AACGCTTTGGCTTCAAACACCAGTG
LOC_Os03g04520
Os.9132.1.A1_at--431--6071Chr03:2082886..2082910 (25 bp)
GAGTTCTTGCGCAAAGAGGCTGCAT
LOC_Os03g04520
Os.9132.1.A1_at--1092--631Chr03:2082863..2082887 (25 bp)
ATGCATTGCAGCTCATTCACTACAT
LOC_Os03g04520
Os.9132.1.A1_at--821--9871Chr03:2082843..2082867 (25 bp)
TACATGGACGGCGTTTTGGCAGCAG
LOC_Os03g04520
Os.9132.1.A1_at--947--5011Chr03:2082808..2082832 (25 bp)
GCAGGATATGCTCCACATGATCTTT
LOC_Os03g04520
Os.9132.1.A1_at--95--6891Chr03:2082773..2082797 (25 bp)
GTATCCGAGGTGATTTCCAGTGCTG
LOC_Os03g04520
Os.9132.1.A1_at--348--4751Chr03:2082752..2082776 (25 bp)
GCTGAGATTCAGATGTACTCTTTTT
LOC_Os03g04520
Os.9132.1.A1_at--680--2591Chr03:2082699..2082723 (25 bp)
AAGCTAAAGCTTTCGTTGTCCCAGT
LOC_Os03g04520
Os.9132.1.A1_at--494--6631Chr03:2082685..2082709 (25 bp)
GTTGTCCCAGTGAGTTTTCATCATG
LOC_Os03g04520
Os.9132.1.A1_at--100--7151Chr03:2082624..2082648 (25 bp)
GTCTTTTGGATGCATAGGCTGACAA
LOC_Os03g04520
Os.9132.1.A1_at--753--7831Chr03:2082495..2082519 (25 bp)
GGTACACGTGATCATTATCTGAAGT
LOC_Os03g04520
Target Sequence 
AACGCTTTGGCTTCAAACACCAGTGCGCTGGAAGCTGGCTGTATACTTGTAGAGTTCTTGCGCAAAGAGGCTGCATGCAT
TGCAGCTCATTCACTACATGGACGGCGTTTTGGCAGCAGGATTGTNTCTGCAGGATATGCTCCACATGATCTTTACTTAC
AGAAGTATCCGAGGTGATTTCCAGTGCTGAGATTCAGATGTACTCTTTTTGGGGGGAAAGATTGGAGTGTACTGATGGAA
GCTAAAGCTTTCGTTGTCCCAGTGAGTTTTCATCATGGGGAAAAGATTNTGATGAACTANCCTCGTAGTTTTGGTCTTTT
GGATGCATAGGCTGACAATCTCGANGAGTTTTCATCAGAATTGATGTATTTCTTTATAGAAGGGTAATACAGGGGTCAGT
AGTCATAGACTCGATAGTTGTTTTTTGGGGGGAAAACAATATGGTACACGTGATCATTATCTGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9132.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis