Browse Element(s) Details


OsAffx.24963.1.S1_at

Description tigr:9631.m00367
TID=OsAffx.24963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0454011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04494NANA3+2076561..2076858NA
LOC_Os03g04500Os.52933.1.S1_at11/113+2076715..2081114TPR Domain containing protein, expressed
LOC_Os03g04520Os.9132.1.A1_at11/113+2082423..2091256RNA recognition motif family protein, expressed
LOC_Os03g04530Os.18623.1.S1_at11/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04530Os.29745.1.S2_at1/113+2094285..2096105Cytochrome P450 family protein, expressed
LOC_Os03g04540OsAffx.24963.1.S1_at11/113+2096791..2097138hypothetical protein
LOC_Os03g04550Os.5899.1.S1_at11/113+2102803..2104757expressed protein
LOC_Os03g04560OsAffx.24964.4.S1_x_at11/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.3.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04560OsAffx.24964.2.S1_x_at1/113+2105102..2108575hypothetical protein
LOC_Os03g04570Os.17182.1.S1_at11/113+2111087..2115836POT family protein, expressed
LOC_Os03g04570Os.46546.2.S1_x_at1/113+2111087..2115836POT family protein, expressed
LOC_Os03g04580Os.48474.1.S1_at11/113+2119027..2120225expressed protein
LOC_Os03g04590Os.12361.1.S1_at8/113+2121836..212460060S ribosomal protein L23, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24963.1.S1_at--677--10531Chr03:2096877..2096901 (25 bp)
TTCTAAACCCCTCGACCGTTGCTGG
LOC_Os03g04540
OsAffx.24963.1.S1_at--399--9831Chr03:2096880..2096904 (25 bp)
TAAACCCCTCGACCGTTGCTGGTCA
LOC_Os03g04540
OsAffx.24963.1.S1_at--862--251Chr03:2096962..2096986 (25 bp)
ATAGGGAAATGGTTACGATGCTCGA
LOC_Os03g04540
OsAffx.24963.1.S1_at--999--5571Chr03:2096967..2096991 (25 bp)
GAAATGGTTACGATGCTCGAGCTCG
LOC_Os03g04540
OsAffx.24963.1.S1_at--222--2971Chr03:2096969..2096993 (25 bp)
AATGGTTACGATGCTCGAGCTCGAA
LOC_Os03g04540
OsAffx.24963.1.S1_at--1001--7871Chr03:2096972..2096996 (25 bp)
GGTTACGATGCTCGAGCTCGAAGCT
LOC_Os03g04540
OsAffx.24963.1.S1_at--911--9371Chr03:2096983..2097007 (25 bp)
TCGAGCTCGAAGCTTGTCGTCGGAG
LOC_Os03g04540
OsAffx.24963.1.S1_at--758--7191Chr03:2096998..2097022 (25 bp)
GTCGTCGGAGGGATGAGGAGTCGTC
LOC_Os03g04540
OsAffx.24963.1.S1_at--1153--5351Chr03:2097048..2097072 (25 bp)
GAAGAGAGCATCATTGCCCGAAGGA
LOC_Os03g04540
OsAffx.24963.1.S1_at--898--5991Chr03:2097051..2097075 (25 bp)
GAGAGCATCATTGCCCGAAGGAGAT
LOC_Os03g04540
OsAffx.24963.1.S1_at--983--3551Chr03:2097056..2097080 (25 bp)
CATCATTGCCCGAAGGAGATAGAGA
LOC_Os03g04540
Target Sequence 
TTCTAAACCCCTCGACCGTTGCTGGTCACCACCACAGCGTGTGCCCCCCAAGGGAGAGGGTTGGGGGGGGAGGGATGGTT
GGGCCATAGGGAAATGGTTACGATGCTCGAGCTCGAAGCTTGTCGTCGGAGGGATGAGGAGTCGTCGTCCACATCAGGGG
AGGGAGAAAGGGAAGAGAGCATCATTGCCCGAAGGAGATAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis